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| Mutant Information |
|---|
| Mutant Name | FN3577-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3577-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8229441 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 11469525 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 11739794 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 14910564 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 29803473 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29803474 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 35273310 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 11461444 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 20931818 | G-A | Homo | INTRON | |
| SBS | Chr2 | 21240831 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 21315271 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 21635923 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 37144091 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15255813 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19319515 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 31545950 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 15768441 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 30321320 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 18386014 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 21286299 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr6 | 26670228 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 9842321 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15666436 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 8524931 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 9812720 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 13412060 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 14947336 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 20603284 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16344979 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2836668 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 4156543 | T-G | Homo | INTERGENIC | |
| SBS | Chr10 | 7469829 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 1291014 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 12709106 | A-C | Hetero | INTRON | |
| SBS | Chr11 | 19681576 | C-G | Hetero | UTR_3_PRIME |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 5231778 | 5231782 | 4 | |
| Deletion | Chr6 | 5643827 | 5643831 | 4 | |
| Deletion | Chr8 | 6131208 | 6131213 | 5 | |
| Deletion | Chr9 | 12337253 | 12337260 | 7 | |
| Deletion | Chr9 | 14308478 | 14308488 | 10 | OsKitaake09g096300 |
| Deletion | Chr11 | 14938757 | 14938759 | 2 | |
| Deletion | Chr7 | 15275128 | 15275130 | 2 | |
| Deletion | Chr1 | 19998116 | 19998120 | 4 | |
| Deletion | Chr7 | 21656951 | 21656953 | 2 | |
| Deletion | Chr4 | 22020110 | 22020112 | 2 | |
| Deletion | Chr1 | 23203058 | 23203071 | 13 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 32668173 | 32668192 | 18 | OsKitaake03g345900  |
| Insertion | Chr7 | 3181931 | 3181934 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 21040435 | Chr7 | 27400532 | |
| Translocation | Chr10 | 21044163 | Chr7 | 27400528 |