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Mutant Information

Mutant Name	FN3578-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3578-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20939959 T-C Homo INTERGENIC
SBS Chr1 35938040 G-A Hetero INTERGENIC
SBS Chr3 19225004 C-G Homo INTERGENIC
SBS Chr3 24666481 A-G Homo INTERGENIC
SBS Chr4 4336128 A-G Hetero SYNONYMOUS_CODING
SBS Chr4 25393845 T-C Homo INTERGENIC
SBS Chr5 12807227 C-T Homo INTERGENIC
SBS Chr6 18379704 A-T Homo INTRON
SBS Chr6 19172843 T-C Homo NON_SYNONYMOUS_CODING OsKitaake06g173300
SBS Chr7 7174965 C-T Hetero INTERGENIC
SBS Chr7 11092381 G-C Hetero INTERGENIC
SBS Chr7 17732046 T-A Homo INTERGENIC
SBS Chr7 21301236 T-A Hetero INTRON
SBS Chr8 4336533 A-T Hetero INTERGENIC
SBS Chr8 13443970 C-A Hetero INTERGENIC
SBS Chr8 13688516 A-G Hetero INTERGENIC
SBS Chr8 13901917 G-A Hetero INTERGENIC
SBS Chr8 16745668 G-A Hetero INTERGENIC
SBS Chr8 25168906 T-C Hetero INTERGENIC
SBS Chr9 6020967 A-T Hetero INTERGENIC
SBS Chr10 6984560 T-G Homo INTERGENIC
SBS Chr10 10231790 C-G Hetero INTERGENIC
SBS Chr11 4405898 C-T Hetero INTRON
SBS Chr11 10029897 C-T Homo INTERGENIC
SBS Chr11 10029899 C-A Homo INTERGENIC
SBS Chr11 12275032 T-G Homo INTRON
SBS Chr11 20217459 T-C Hetero INTERGENIC
SBS Chr11 23529064 T-C Homo INTERGENIC
SBS Chr11 25988119 G-A Homo INTRON
SBS Chr12 13434878 C-T Hetero INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 7484 7835 351
Deletion Chr5 708261 708267 6
Deletion Chr8 995024 995026 2
Deletion Chr2 8864182 8864183 1 OsKitaake02g111600
Deletion Chr2 9061079 9061083 4
Deletion Chr12 11342469 11342475 6
Deletion Chr9 13008564 13008568 4
Deletion Chr2 15872724 15872725 1
Deletion Chr10 18690190 18690197 7
Deletion Chr10 18881987 18881993 6
Deletion Chr6 22722800 22722805 5
Deletion Chr8 23388476 23388479 3
Deletion Chr1 24406017 24406018 1
Deletion Chr11 26055681 26055688 7
Deletion Chr1 26271850 26271854 4
Deletion Chr3 26842389 26842391 2
Deletion Chr3 35083006 35083016 10
Deletion Chr1 44132001 44171000 38999 8

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 28251065 28251068 2
Insertion Chr5 22411876 22411879 2
Insertion Chr11 2031975 2031979 3
Insertion Chr11 7137989 7137993 3
Insertion Chr12 6620343 6620346 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 3103187 3735676 OsKitaake08g034900
Inversion Chr8 3103188 3735668 OsKitaake08g034900

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 12091648 Chr2 7813645
Translocation Chr8 27347514 Chr1 44171259 OsKitaake01g493300
Translocation Chr8 29249054 Chr1 44130164 OsKitaake01g492600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20939959	T-C	Homo	INTERGENIC
SBS	Chr1	35938040	G-A	Hetero	INTERGENIC
SBS	Chr3	19225004	C-G	Homo	INTERGENIC
SBS	Chr3	24666481	A-G	Homo	INTERGENIC
SBS	Chr4	4336128	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr4	25393845	T-C	Homo	INTERGENIC
SBS	Chr5	12807227	C-T	Homo	INTERGENIC
SBS	Chr6	18379704	A-T	Homo	INTRON
SBS	Chr6	19172843	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g173300
SBS	Chr7	7174965	C-T	Hetero	INTERGENIC
SBS	Chr7	11092381	G-C	Hetero	INTERGENIC
SBS	Chr7	17732046	T-A	Homo	INTERGENIC
SBS	Chr7	21301236	T-A	Hetero	INTRON
SBS	Chr8	4336533	A-T	Hetero	INTERGENIC
SBS	Chr8	13443970	C-A	Hetero	INTERGENIC
SBS	Chr8	13688516	A-G	Hetero	INTERGENIC
SBS	Chr8	13901917	G-A	Hetero	INTERGENIC
SBS	Chr8	16745668	G-A	Hetero	INTERGENIC
SBS	Chr8	25168906	T-C	Hetero	INTERGENIC
SBS	Chr9	6020967	A-T	Hetero	INTERGENIC
SBS	Chr10	6984560	T-G	Homo	INTERGENIC
SBS	Chr10	10231790	C-G	Hetero	INTERGENIC
SBS	Chr11	4405898	C-T	Hetero	INTRON
SBS	Chr11	10029897	C-T	Homo	INTERGENIC
SBS	Chr11	10029899	C-A	Homo	INTERGENIC
SBS	Chr11	12275032	T-G	Homo	INTRON
SBS	Chr11	20217459	T-C	Hetero	INTERGENIC
SBS	Chr11	23529064	T-C	Homo	INTERGENIC
SBS	Chr11	25988119	G-A	Homo	INTRON
SBS	Chr12	13434878	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	7484	7835	351
Deletion	Chr5	708261	708267	6
Deletion	Chr8	995024	995026	2
Deletion	Chr2	8864182	8864183	1	OsKitaake02g111600
Deletion	Chr2	9061079	9061083	4
Deletion	Chr12	11342469	11342475	6
Deletion	Chr9	13008564	13008568	4
Deletion	Chr2	15872724	15872725	1
Deletion	Chr10	18690190	18690197	7
Deletion	Chr10	18881987	18881993	6
Deletion	Chr6	22722800	22722805	5
Deletion	Chr8	23388476	23388479	3
Deletion	Chr1	24406017	24406018	1
Deletion	Chr11	26055681	26055688	7
Deletion	Chr1	26271850	26271854	4
Deletion	Chr3	26842389	26842391	2
Deletion	Chr3	35083006	35083016	10
Deletion	Chr1	44132001	44171000	38999	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3103187	3735676	OsKitaake08g034900
Inversion	Chr8	3103188	3735668	OsKitaake08g034900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes