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Mutant Information

Mutant Name	FN3579-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3579-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23157202 G-A Hetero INTERGENIC
SBS Chr1 28338450 C-T Homo INTERGENIC
SBS Chr1 30496016 G-A Hetero INTERGENIC
SBS Chr1 41245309 G-A Hetero INTERGENIC
SBS Chr2 18538900 C-G Homo INTERGENIC
SBS Chr2 20288201 C-T Hetero INTERGENIC
SBS Chr2 24905766 G-A Hetero INTERGENIC
SBS Chr2 25458759 C-A Hetero INTERGENIC
SBS Chr2 26008319 T-A Hetero INTRON
SBS Chr3 7347412 T-A Homo INTERGENIC
SBS Chr3 7347421 A-G Homo INTERGENIC
SBS Chr3 28409641 A-C Hetero INTRON
SBS Chr3 31116133 C-T Hetero INTERGENIC
SBS Chr4 6382635 G-C Hetero INTERGENIC
SBS Chr4 25063549 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 6864391 C-T Hetero INTRON
SBS Chr5 14474717 A-G Hetero INTERGENIC
SBS Chr6 1997907 T-G Hetero INTERGENIC
SBS Chr6 3526406 T-A Hetero INTERGENIC
SBS Chr6 4173267 T-C Hetero INTERGENIC
SBS Chr6 6843190 C-T Hetero INTRON
SBS Chr6 12898494 G-A Hetero INTERGENIC
SBS Chr7 17386459 T-C Homo INTERGENIC
SBS Chr7 29393626 C-T Homo UTR_3_PRIME
SBS Chr8 17951739 T-G Homo INTERGENIC
SBS Chr8 20269465 G-A Hetero INTERGENIC
SBS Chr8 24874072 A-T Hetero INTERGENIC
SBS Chr8 27222307 G-A Homo INTRON
SBS Chr9 4874711 G-T Hetero INTERGENIC
SBS Chr9 4874712 C-T Hetero INTERGENIC
SBS Chr10 3245389 G-A Hetero INTERGENIC
SBS Chr12 9688407 C-T Hetero INTERGENIC
SBS Chr12 14234470 G-A Hetero INTERGENIC
SBS Chr12 23454385 A-G Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 77001 155000 77999 5
Deletion Chr2 3031960 3031967 7
Deletion Chr3 8986201 8986206 5
Deletion Chr4 10335753 10335754 1
Deletion Chr9 12985389 12985393 4
Deletion Chr9 14352472 14352482 10
Deletion Chr3 18715193 18715194 1
Deletion Chr2 24404580 24404583 3
Deletion Chr11 24767976 24767982 6
Deletion Chr6 26543989 26543992 3
Deletion Chr3 28265001 28348000 82999 14
Deletion Chr1 28339854 28339876 22
Deletion Chr7 29210723 29210724 1
Deletion Chr4 30416725 30416741 16

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18319526 18319530 3
Insertion Chr3 18676394 18676397 2
Insertion Chr4 32167029 32167032 2
Insertion Chr6 15571137 15571140 2
Insertion Chr7 21616390 21616406 15
Insertion Chr9 8111720 8111723 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 2501962 Chr1 28032996 2
Translocation Chr2 4604678 Chr1 10167899 OsKitaake01g128100
Translocation Chr2 4604687 Chr1 10166213 OsKitaake01g128000
Translocation Chr3 32917292 Chr1 28033005 OsKitaake01g272700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23157202	G-A	Hetero	INTERGENIC
SBS	Chr1	28338450	C-T	Homo	INTERGENIC
SBS	Chr1	30496016	G-A	Hetero	INTERGENIC
SBS	Chr1	41245309	G-A	Hetero	INTERGENIC
SBS	Chr2	18538900	C-G	Homo	INTERGENIC
SBS	Chr2	20288201	C-T	Hetero	INTERGENIC
SBS	Chr2	24905766	G-A	Hetero	INTERGENIC
SBS	Chr2	25458759	C-A	Hetero	INTERGENIC
SBS	Chr2	26008319	T-A	Hetero	INTRON
SBS	Chr3	7347412	T-A	Homo	INTERGENIC
SBS	Chr3	7347421	A-G	Homo	INTERGENIC
SBS	Chr3	28409641	A-C	Hetero	INTRON
SBS	Chr3	31116133	C-T	Hetero	INTERGENIC
SBS	Chr4	6382635	G-C	Hetero	INTERGENIC
SBS	Chr4	25063549	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	6864391	C-T	Hetero	INTRON
SBS	Chr5	14474717	A-G	Hetero	INTERGENIC
SBS	Chr6	1997907	T-G	Hetero	INTERGENIC
SBS	Chr6	3526406	T-A	Hetero	INTERGENIC
SBS	Chr6	4173267	T-C	Hetero	INTERGENIC
SBS	Chr6	6843190	C-T	Hetero	INTRON
SBS	Chr6	12898494	G-A	Hetero	INTERGENIC
SBS	Chr7	17386459	T-C	Homo	INTERGENIC
SBS	Chr7	29393626	C-T	Homo	UTR_3_PRIME
SBS	Chr8	17951739	T-G	Homo	INTERGENIC
SBS	Chr8	20269465	G-A	Hetero	INTERGENIC
SBS	Chr8	24874072	A-T	Hetero	INTERGENIC
SBS	Chr8	27222307	G-A	Homo	INTRON
SBS	Chr9	4874711	G-T	Hetero	INTERGENIC
SBS	Chr9	4874712	C-T	Hetero	INTERGENIC
SBS	Chr10	3245389	G-A	Hetero	INTERGENIC
SBS	Chr12	9688407	C-T	Hetero	INTERGENIC
SBS	Chr12	14234470	G-A	Hetero	INTERGENIC
SBS	Chr12	23454385	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	77001	155000	77999	5
Deletion	Chr2	3031960	3031967	7
Deletion	Chr3	8986201	8986206	5
Deletion	Chr4	10335753	10335754	1
Deletion	Chr9	12985389	12985393	4
Deletion	Chr9	14352472	14352482	10
Deletion	Chr3	18715193	18715194	1
Deletion	Chr2	24404580	24404583	3
Deletion	Chr11	24767976	24767982	6
Deletion	Chr6	26543989	26543992	3
Deletion	Chr3	28265001	28348000	82999	14
Deletion	Chr1	28339854	28339876	22
Deletion	Chr7	29210723	29210724	1
Deletion	Chr4	30416725	30416741	16

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	2501962	Chr1	28032996	2
Translocation	Chr2	4604678	Chr1	10167899	OsKitaake01g128100
Translocation	Chr2	4604687	Chr1	10166213	OsKitaake01g128000
Translocation	Chr3	32917292	Chr1	28033005	OsKitaake01g272700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes