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Mutant Information

Mutant Name	FN358-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN358-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25919727 T-G Homo INTRON
SBS Chr1 41233917 A-G Hetero UTR_5_PRIME
SBS Chr2 29438265 C-T Hetero STOP_GAINED OsKitaake02g296400
SBS Chr4 7195199 T-A Homo INTERGENIC
SBS Chr4 22259904 G-C Hetero INTERGENIC
SBS Chr5 7559467 G-A Homo INTERGENIC
SBS Chr5 7869608 C-T Hetero INTERGENIC
SBS Chr5 11955718 A-G Homo INTERGENIC
SBS Chr6 14912305 G-A Homo INTERGENIC
SBS Chr6 17287692 T-A Homo INTRON
SBS Chr6 18776249 C-T Homo INTRON
SBS Chr8 9820366 G-A Hetero INTERGENIC
SBS Chr8 10146854 T-C Hetero INTERGENIC
SBS Chr8 19245890 T-C Hetero INTERGENIC
SBS Chr9 6510996 G-A Hetero INTERGENIC
SBS Chr10 17088462 G-T Hetero INTERGENIC
SBS Chr10 17940046 T-A Hetero INTERGENIC
SBS Chr10 23371927 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g199100
SBS Chr11 8850533 G-C Hetero INTERGENIC
SBS Chr11 20340088 G-A Homo INTERGENIC
SBS Chr12 17382751 G-C Homo NON_SYNONYMOUS_CODING OsKitaake12g127800

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 4089589 4089590 1
Deletion Chr4 7064708 7064709 1
Deletion Chr12 9730001 9756000 25999
Deletion Chr5 11326153 11326154 1
Deletion Chr5 11963954 11963956 2
Deletion Chr9 13405417 13405422 5
Deletion Chr7 13705001 13730000 24999
Deletion Chr10 13863190 13863198 8
Deletion Chr7 15520530 15520540 10
Deletion Chr1 19845283 19845291 8
Deletion Chr10 20248201 20248205 4
Deletion Chr5 21389849 21389855 6
Deletion Chr11 27640885 27640995 110
Deletion Chr2 33841170 33841172 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 1347710 1347713 2
Insertion Chr6 22052144 22052147 2
Insertion Chr6 443 445 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 6598983 7390635 2
Inversion Chr6 6598985 7390640 2
Inversion Chr2 15832476 16430938 OsKitaake02g168300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 15783247 Chr1 43747610 2
Translocation Chr2 15832427 Chr1 43747601 OsKitaake01g486900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25919727	T-G	Homo	INTRON
SBS	Chr1	41233917	A-G	Hetero	UTR_5_PRIME
SBS	Chr2	29438265	C-T	Hetero	STOP_GAINED	OsKitaake02g296400
SBS	Chr4	7195199	T-A	Homo	INTERGENIC
SBS	Chr4	22259904	G-C	Hetero	INTERGENIC
SBS	Chr5	7559467	G-A	Homo	INTERGENIC
SBS	Chr5	7869608	C-T	Hetero	INTERGENIC
SBS	Chr5	11955718	A-G	Homo	INTERGENIC
SBS	Chr6	14912305	G-A	Homo	INTERGENIC
SBS	Chr6	17287692	T-A	Homo	INTRON
SBS	Chr6	18776249	C-T	Homo	INTRON
SBS	Chr8	9820366	G-A	Hetero	INTERGENIC
SBS	Chr8	10146854	T-C	Hetero	INTERGENIC
SBS	Chr8	19245890	T-C	Hetero	INTERGENIC
SBS	Chr9	6510996	G-A	Hetero	INTERGENIC
SBS	Chr10	17088462	G-T	Hetero	INTERGENIC
SBS	Chr10	17940046	T-A	Hetero	INTERGENIC
SBS	Chr10	23371927	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g199100
SBS	Chr11	8850533	G-C	Hetero	INTERGENIC
SBS	Chr11	20340088	G-A	Homo	INTERGENIC
SBS	Chr12	17382751	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g127800

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	4089589	4089590	1
Deletion	Chr4	7064708	7064709	1
Deletion	Chr12	9730001	9756000	25999
Deletion	Chr5	11326153	11326154	1
Deletion	Chr5	11963954	11963956	2
Deletion	Chr9	13405417	13405422	5
Deletion	Chr7	13705001	13730000	24999
Deletion	Chr10	13863190	13863198	8
Deletion	Chr7	15520530	15520540	10
Deletion	Chr1	19845283	19845291	8
Deletion	Chr10	20248201	20248205	4
Deletion	Chr5	21389849	21389855	6
Deletion	Chr11	27640885	27640995	110
Deletion	Chr2	33841170	33841172	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	6598983	7390635	2
Inversion	Chr6	6598985	7390640	2
Inversion	Chr2	15832476	16430938	OsKitaake02g168300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes