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| Mutant Information |
|---|
| Mutant Name | FN3580-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3580-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10130716 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 19744662 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 21817610 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 32957856 | C-T | Homo | INTRON | |
| SBS | Chr2 | 13696809 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 9970326 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 17767706 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 25385291 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g268000 |
| SBS | Chr3 | 33148740 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 35382920 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16486873 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 26726420 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 30975490 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 887816 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 30035664 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 3259601 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 5855964 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18758196 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 14430352 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 10049181 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 12207457 | T-G | Homo | INTERGENIC | |
| SBS | Chr9 | 22449255 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 9043185 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14807541 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 15952812 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 5792672 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 15126249 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 22373511 | C-A | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1823176 | 1823184 | 8 | |
| Deletion | Chr6 | 2108029 | 2108035 | 6 | |
| Deletion | Chr10 | 2126432 | 2126438 | 6 | |
| Deletion | Chr9 | 2861001 | 2965000 | 103999 | 2 |
| Deletion | Chr9 | 2970001 | 3066000 | 95999 | 9 |
| Deletion | Chr6 | 3065982 | 3065983 | 1 | |
| Deletion | Chr10 | 19604616 | 19604619 | 3 | OsKitaake10g144400 |
| Deletion | Chr4 | 20202830 | 20202832 | 2 | |
| Deletion | Chr8 | 21255030 | 21255042 | 12 | |
| Deletion | Chr2 | 21499535 | 21499545 | 10 | |
| Deletion | Chr9 | 21584427 | 21584434 | 7 | |
| Deletion | Chr9 | 22577306 | 22577313 | 7 | |
| Deletion | Chr1 | 31710509 | 31710511 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 5345278 | 5345280 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 2770954 | 2853031 | |
| Inversion | Chr9 | 2853053 | 3250342 |