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Mutant Information

Mutant Name	FN3581-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3581-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4432213 G-A Homo INTERGENIC
SBS Chr1 18986154 T-A Hetero INTRON
SBS Chr1 31950624 T-C Hetero INTERGENIC
SBS Chr2 8416738 T-A Homo INTRON
SBS Chr2 22364919 C-T Hetero INTERGENIC
SBS Chr2 22416748 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 24846703 C-T Homo INTERGENIC
SBS Chr4 1627647 C-A Hetero INTERGENIC
SBS Chr4 5016501 G-A Hetero INTERGENIC
SBS Chr4 7348699 C-T Hetero INTERGENIC
SBS Chr4 7559025 A-G Hetero INTERGENIC
SBS Chr4 19117648 A-T Hetero INTERGENIC
SBS Chr4 20849416 A-T Hetero INTERGENIC
SBS Chr5 12170535 C-T Homo INTERGENIC
SBS Chr6 10738288 A-T Hetero INTERGENIC
SBS Chr6 11503718 C-T Hetero INTERGENIC
SBS Chr6 11807106 G-A Hetero INTERGENIC
SBS Chr6 15954562 C-T Hetero INTRON
SBS Chr7 8447292 G-T Hetero INTERGENIC
SBS Chr7 26562338 A-G Homo SYNONYMOUS_CODING
SBS Chr8 29162540 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g253400
SBS Chr9 9853942 T-A Hetero INTERGENIC
SBS Chr10 5275404 A-T Hetero INTERGENIC
SBS Chr10 12226898 G-A Hetero INTERGENIC
SBS Chr11 6659744 T-A Hetero INTERGENIC
SBS Chr11 6810173 T-A Hetero INTRON
SBS Chr11 13014820 C-T Hetero INTERGENIC
SBS Chr11 13239584 C-T Hetero INTERGENIC
SBS Chr11 20162887 C-T Hetero INTERGENIC
SBS Chr11 27480419 G-A Hetero INTERGENIC
SBS Chr11 28056151 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g230300
SBS Chr11 28507411 A-C Hetero INTRON
SBS Chr11 29101176 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g238500
SBS Chr12 26233367 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g217500

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 85068 85076 8
Deletion Chr7 878142 878148 6
Deletion Chr10 5403001 5694000 290999 13
Deletion Chr11 7266364 7266366 2
Deletion Chr2 10417263 10417265 2
Deletion Chr10 15111103 15111104 1
Deletion Chr3 16716680 16716681 1
Deletion Chr3 17358936 17359015 79
Deletion Chr11 22116089 22116090 1
Deletion Chr11 22195378 22195383 5
Deletion Chr7 25302837 25302849 12

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 8739643 8739646 2
Insertion Chr8 22732570 22732573 2
Insertion Chr9 7751899 7751902 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 15076349 15547284

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2107782 Chr7 15548438
Translocation Chr11 2107797 Chr7 15548156
Translocation Chr8 7578660 Chr7 15548141
Translocation Chr12 14334843 Chr8 7454646
Translocation Chr12 14334846 Chr8 7578166

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4432213	G-A	Homo	INTERGENIC
SBS	Chr1	18986154	T-A	Hetero	INTRON
SBS	Chr1	31950624	T-C	Hetero	INTERGENIC
SBS	Chr2	8416738	T-A	Homo	INTRON
SBS	Chr2	22364919	C-T	Hetero	INTERGENIC
SBS	Chr2	22416748	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	24846703	C-T	Homo	INTERGENIC
SBS	Chr4	1627647	C-A	Hetero	INTERGENIC
SBS	Chr4	5016501	G-A	Hetero	INTERGENIC
SBS	Chr4	7348699	C-T	Hetero	INTERGENIC
SBS	Chr4	7559025	A-G	Hetero	INTERGENIC
SBS	Chr4	19117648	A-T	Hetero	INTERGENIC
SBS	Chr4	20849416	A-T	Hetero	INTERGENIC
SBS	Chr5	12170535	C-T	Homo	INTERGENIC
SBS	Chr6	10738288	A-T	Hetero	INTERGENIC
SBS	Chr6	11503718	C-T	Hetero	INTERGENIC
SBS	Chr6	11807106	G-A	Hetero	INTERGENIC
SBS	Chr6	15954562	C-T	Hetero	INTRON
SBS	Chr7	8447292	G-T	Hetero	INTERGENIC
SBS	Chr7	26562338	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr8	29162540	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g253400
SBS	Chr9	9853942	T-A	Hetero	INTERGENIC
SBS	Chr10	5275404	A-T	Hetero	INTERGENIC
SBS	Chr10	12226898	G-A	Hetero	INTERGENIC
SBS	Chr11	6659744	T-A	Hetero	INTERGENIC
SBS	Chr11	6810173	T-A	Hetero	INTRON
SBS	Chr11	13014820	C-T	Hetero	INTERGENIC
SBS	Chr11	13239584	C-T	Hetero	INTERGENIC
SBS	Chr11	20162887	C-T	Hetero	INTERGENIC
SBS	Chr11	27480419	G-A	Hetero	INTERGENIC
SBS	Chr11	28056151	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g230300
SBS	Chr11	28507411	A-C	Hetero	INTRON
SBS	Chr11	29101176	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g238500
SBS	Chr12	26233367	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g217500

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	85068	85076	8
Deletion	Chr7	878142	878148	6
Deletion	Chr10	5403001	5694000	290999	13
Deletion	Chr11	7266364	7266366	2
Deletion	Chr2	10417263	10417265	2
Deletion	Chr10	15111103	15111104	1
Deletion	Chr3	16716680	16716681	1
Deletion	Chr3	17358936	17359015	79
Deletion	Chr11	22116089	22116090	1
Deletion	Chr11	22195378	22195383	5
Deletion	Chr7	25302837	25302849	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	15076349	15547284

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes