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| Mutant Information |
|---|
| Mutant Name | FN3591-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3591-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4118600 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 7556380 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g094700 |
| SBS | Chr1 | 11755436 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 15920155 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 4288701 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7892813 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 16117458 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 20075657 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 19164331 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16737254 | C-T | Homo | INTRON | |
| SBS | Chr4 | 22305525 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 27063220 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 31426268 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 12927142 | A-C | Homo | INTERGENIC | |
| SBS | Chr6 | 2384662 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 10006659 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 14795005 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 22285772 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 22285774 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 22659170 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 16983723 | G-A | Homo | INTRON | |
| SBS | Chr8 | 14513434 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 3076704 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g016400 |
| SBS | Chr9 | 3476875 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 3476877 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13359478 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 20362020 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 4816592 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6809095 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 16103643 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 18652563 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 10276024 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 2765649 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 9337833 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23725930 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 25292539 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g206300 |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 635509 | 635513 | 4 | |
| Deletion | Chr4 | 4024717 | 4024719 | 2 | |
| Deletion | Chr7 | 6653001 | 6667000 | 13999 | OsKitaake07g076400 |
| Deletion | Chr5 | 7034262 | 7034264 | 2 | |
| Deletion | Chr11 | 10681783 | 10681784 | 1 | |
| Deletion | Chr7 | 12887180 | 12887193 | 13 | |
| Deletion | Chr5 | 14679792 | 14679807 | 15 | |
| Deletion | Chr5 | 15563160 | 15563161 | 1 | |
| Deletion | Chr2 | 16116389 | 16116393 | 4 | |
| Deletion | Chr11 | 19167110 | 19167112 | 2 | |
| Deletion | Chr3 | 20671241 | 20671245 | 4 | |
| Deletion | Chr11 | 21180703 | 21180710 | 7 | OsKitaake11g167700 |
| Deletion | Chr6 | 22012768 | 22012773 | 5 | |
| Deletion | Chr7 | 22021249 | 22021250 | 1 | |
| Deletion | Chr6 | 22907624 | 22907625 | 1 | |
| Deletion | Chr2 | 29485883 | 29485888 | 5 | |
| Deletion | Chr3 | 33306862 | 33306873 | 11 | |
| Deletion | Chr4 | 33868523 | 33868524 | 1 | |
| Deletion | Chr2 | 35577311 | 35577313 | 2 | OsKitaake02g373900 |
| Deletion | Chr1 | 40507274 | 40507287 | 13 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 37794239 | 37794242 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 4111443 | 4432929 | OsKitaake05g049400 |
| Inversion | Chr5 | 4111447 | 4432958 | OsKitaake05g049400 |