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Mutant Information

Mutant Name	FN3592-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3592-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12280667 C-G Hetero INTERGENIC
SBS Chr1 27140369 G-T Hetero INTERGENIC
SBS Chr1 28359990 G-T Hetero INTERGENIC
SBS Chr1 29885314 G-T Hetero INTERGENIC
SBS Chr1 38698461 G-A Hetero UTR_5_PRIME
SBS Chr1 39255822 C-A Hetero INTERGENIC
SBS Chr2 13287263 C-A Hetero INTERGENIC
SBS Chr2 23610269 G-A Homo INTERGENIC
SBS Chr2 25863119 G-A Homo INTERGENIC
SBS Chr2 33672313 G-A Hetero INTERGENIC
SBS Chr3 10776288 T-A Hetero UTR_3_PRIME
SBS Chr3 18358102 G-T Homo INTERGENIC
SBS Chr3 18791320 C-A Homo INTERGENIC
SBS Chr3 20234784 G-A Hetero INTERGENIC
SBS Chr4 13082068 G-A Homo INTERGENIC
SBS Chr4 27431519 G-C Hetero INTERGENIC
SBS Chr5 18024069 T-C Hetero INTERGENIC
SBS Chr5 23813050 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g209100
SBS Chr6 796164 C-T Hetero INTERGENIC
SBS Chr6 796165 T-C Hetero INTERGENIC
SBS Chr6 18533315 C-A Hetero UTR_3_PRIME
SBS Chr6 22366032 C-A Hetero INTERGENIC
SBS Chr6 22699918 C-T Hetero INTRON
SBS Chr6 27536819 G-T Hetero INTERGENIC
SBS Chr7 1633579 A-G Homo NON_SYNONYMOUS_CODING OsKitaake07g022300
SBS Chr8 22624689 G-A Hetero INTRON
SBS Chr8 28627825 C-T Homo INTERGENIC
SBS Chr9 2193405 T-C Homo INTERGENIC
SBS Chr9 18314541 A-G Homo INTERGENIC
SBS Chr9 19225954 A-G Homo INTERGENIC
SBS Chr11 9912990 A-G Hetero INTERGENIC
SBS Chr11 15754195 G-A Hetero INTERGENIC
SBS Chr11 24182132 T-G Hetero UTR_3_PRIME
SBS Chr12 20864303 C-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 667366 667371 5
Deletion Chr3 2261421 2261437 16 OsKitaake03g032600
Deletion Chr8 2586340 2586359 19
Deletion Chr6 4515665 4515667 2
Deletion Chr12 5303871 5303878 7
Deletion Chr6 5334907 5334915 8
Deletion Chr2 5370364 5370365 1
Deletion Chr11 6666885 6666887 2
Deletion Chr4 7255649 7255654 5
Deletion Chr7 7330104 7330115 11
Deletion Chr12 8193011 8193020 9
Deletion Chr6 9643618 9643629 11
Deletion Chr5 12025902 12025905 3
Deletion Chr3 13417267 13417280 13 OsKitaake03g179350
Deletion Chr12 17175166 17175168 2
Deletion Chr2 24154825 24154828 3 OsKitaake02g238100
Deletion Chr1 41166305 41166306 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 18553758 18553760 1

Inversions: 9

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 10976217 11500255
Inversion Chr4 10977532 11499624
Inversion Chr4 11499478 12271668 OsKitaake04g059500
Inversion Chr4 12171141 12271469 OsKitaake04g059500
Inversion Chr4 12171153 12271692 OsKitaake04g059500
Inversion Chr11 20369616 20744465
Inversion Chr11 20369621 21074540 OsKitaake11g167500
Inversion Chr11 20695225 21074525 2
Inversion Chr11 20695228 20744465 OsKitaake11g162600

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 36349282 Chr1 40681601 OsKitaake03g403300
Translocation Chr3 36353575 Chr1 40681596 OsKitaake03g403300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12280667	C-G	Hetero	INTERGENIC
SBS	Chr1	27140369	G-T	Hetero	INTERGENIC
SBS	Chr1	28359990	G-T	Hetero	INTERGENIC
SBS	Chr1	29885314	G-T	Hetero	INTERGENIC
SBS	Chr1	38698461	G-A	Hetero	UTR_5_PRIME
SBS	Chr1	39255822	C-A	Hetero	INTERGENIC
SBS	Chr2	13287263	C-A	Hetero	INTERGENIC
SBS	Chr2	23610269	G-A	Homo	INTERGENIC
SBS	Chr2	25863119	G-A	Homo	INTERGENIC
SBS	Chr2	33672313	G-A	Hetero	INTERGENIC
SBS	Chr3	10776288	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	18358102	G-T	Homo	INTERGENIC
SBS	Chr3	18791320	C-A	Homo	INTERGENIC
SBS	Chr3	20234784	G-A	Hetero	INTERGENIC
SBS	Chr4	13082068	G-A	Homo	INTERGENIC
SBS	Chr4	27431519	G-C	Hetero	INTERGENIC
SBS	Chr5	18024069	T-C	Hetero	INTERGENIC
SBS	Chr5	23813050	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g209100
SBS	Chr6	796164	C-T	Hetero	INTERGENIC
SBS	Chr6	796165	T-C	Hetero	INTERGENIC
SBS	Chr6	18533315	C-A	Hetero	UTR_3_PRIME
SBS	Chr6	22366032	C-A	Hetero	INTERGENIC
SBS	Chr6	22699918	C-T	Hetero	INTRON
SBS	Chr6	27536819	G-T	Hetero	INTERGENIC
SBS	Chr7	1633579	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g022300
SBS	Chr8	22624689	G-A	Hetero	INTRON
SBS	Chr8	28627825	C-T	Homo	INTERGENIC
SBS	Chr9	2193405	T-C	Homo	INTERGENIC
SBS	Chr9	18314541	A-G	Homo	INTERGENIC
SBS	Chr9	19225954	A-G	Homo	INTERGENIC
SBS	Chr11	9912990	A-G	Hetero	INTERGENIC
SBS	Chr11	15754195	G-A	Hetero	INTERGENIC
SBS	Chr11	24182132	T-G	Hetero	UTR_3_PRIME
SBS	Chr12	20864303	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	667366	667371	5
Deletion	Chr3	2261421	2261437	16	OsKitaake03g032600
Deletion	Chr8	2586340	2586359	19
Deletion	Chr6	4515665	4515667	2
Deletion	Chr12	5303871	5303878	7
Deletion	Chr6	5334907	5334915	8
Deletion	Chr2	5370364	5370365	1
Deletion	Chr11	6666885	6666887	2
Deletion	Chr4	7255649	7255654	5
Deletion	Chr7	7330104	7330115	11
Deletion	Chr12	8193011	8193020	9
Deletion	Chr6	9643618	9643629	11
Deletion	Chr5	12025902	12025905	3
Deletion	Chr3	13417267	13417280	13	OsKitaake03g179350
Deletion	Chr12	17175166	17175168	2
Deletion	Chr2	24154825	24154828	3	OsKitaake02g238100
Deletion	Chr1	41166305	41166306	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	10976217	11500255
Inversion	Chr4	10977532	11499624
Inversion	Chr4	11499478	12271668	OsKitaake04g059500
Inversion	Chr4	12171141	12271469	OsKitaake04g059500
Inversion	Chr4	12171153	12271692	OsKitaake04g059500
Inversion	Chr11	20369616	20744465
Inversion	Chr11	20369621	21074540	OsKitaake11g167500
Inversion	Chr11	20695225	21074525	2
Inversion	Chr11	20695228	20744465	OsKitaake11g162600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes