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Mutant Information

Mutant Name	FN3593-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3593-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 19

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 3940885 T-A Hetero INTERGENIC
SBS Chr2 7401335 G-T Hetero INTERGENIC
SBS Chr3 14825960 C-T Hetero INTERGENIC
SBS Chr3 19105757 G-C Hetero INTERGENIC
SBS Chr3 19566984 G-A Hetero INTERGENIC
SBS Chr3 30084677 A-G Homo INTERGENIC
SBS Chr4 19903546 A-G Hetero INTERGENIC
SBS Chr4 31494015 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 32278927 C-A Hetero INTERGENIC
SBS Chr5 8787256 G-T Homo INTERGENIC
SBS Chr5 12506952 C-T Hetero INTERGENIC
SBS Chr5 16289881 C-T Hetero INTRON
SBS Chr5 16473731 C-T Hetero INTERGENIC
SBS Chr8 10081853 C-T Hetero INTERGENIC
SBS Chr10 794413 C-G Homo SYNONYMOUS_CODING
SBS Chr10 4607315 G-A Hetero INTERGENIC
SBS Chr10 17066628 A-T Hetero INTERGENIC
SBS Chr12 10389062 G-T Hetero INTRON
SBS Chr12 11202873 C-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 207235 207237 2
Deletion Chr11 5115846 5115858 12
Deletion Chr9 7208439 7208442 3
Deletion Chr8 10629755 10629757 2
Deletion Chr8 19879001 19888000 8999
Deletion Chr5 19905754 19905758 4
Deletion Chr8 23250687 23250690 3
Deletion Chr11 24342192 24342230 38
Deletion Chr8 28506548 28506550 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6819817 6819820 2
Insertion Chr6 23527148 23527153 4
Insertion Chr7 11985037 11985039 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 29226199 30188890

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 19888613 Chr4 6986587
Translocation Chr8 19906816 Chr4 6986574
Translocation Chr12 21270444 Chr7 26337047
Translocation Chr5 28520388 Chr4 9035308 OsKitaake05g266100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	3940885	T-A	Hetero	INTERGENIC
SBS	Chr2	7401335	G-T	Hetero	INTERGENIC
SBS	Chr3	14825960	C-T	Hetero	INTERGENIC
SBS	Chr3	19105757	G-C	Hetero	INTERGENIC
SBS	Chr3	19566984	G-A	Hetero	INTERGENIC
SBS	Chr3	30084677	A-G	Homo	INTERGENIC
SBS	Chr4	19903546	A-G	Hetero	INTERGENIC
SBS	Chr4	31494015	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	32278927	C-A	Hetero	INTERGENIC
SBS	Chr5	8787256	G-T	Homo	INTERGENIC
SBS	Chr5	12506952	C-T	Hetero	INTERGENIC
SBS	Chr5	16289881	C-T	Hetero	INTRON
SBS	Chr5	16473731	C-T	Hetero	INTERGENIC
SBS	Chr8	10081853	C-T	Hetero	INTERGENIC
SBS	Chr10	794413	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr10	4607315	G-A	Hetero	INTERGENIC
SBS	Chr10	17066628	A-T	Hetero	INTERGENIC
SBS	Chr12	10389062	G-T	Hetero	INTRON
SBS	Chr12	11202873	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	207235	207237	2
Deletion	Chr11	5115846	5115858	12
Deletion	Chr9	7208439	7208442	3
Deletion	Chr8	10629755	10629757	2
Deletion	Chr8	19879001	19888000	8999
Deletion	Chr5	19905754	19905758	4
Deletion	Chr8	23250687	23250690	3
Deletion	Chr11	24342192	24342230	38
Deletion	Chr8	28506548	28506550	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	29226199	30188890

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes