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| Mutant Information |
|---|
| Mutant Name | FN3594-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3594-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1088669 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 13904084 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 18985640 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 23188869 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 17457549 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 19223374 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 23691865 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 30405031 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 32383630 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 32383639 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 34106136 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 36409582 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 36484324 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 7017261 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8117173 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 8117174 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17049225 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 18533631 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 8401242 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 27901405 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 27565100 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28106009 | G-T | Hetero | INTRON | |
| SBS | Chr8 | 7236813 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 9560531 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9945597 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 11231280 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 11231281 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 11231286 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 17756465 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 20077841 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18228620 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 19955927 | G-A | Hetero | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 2189113 | 2189116 | 3 | |
| Deletion | Chr3 | 3194236 | 3194240 | 4 | |
| Deletion | Chr3 | 3749190 | 3749205 | 15 | |
| Deletion | Chr4 | 3828144 | 3828145 | 1 | |
| Deletion | Chr12 | 7332496 | 7332514 | 18 | |
| Deletion | Chr10 | 11192105 | 11192108 | 3 | |
| Deletion | Chr7 | 11415234 | 11415237 | 3 | |
| Deletion | Chr2 | 12485477 | 12485487 | 10 | |
| Deletion | Chr7 | 16003717 | 16003721 | 4 | |
| Deletion | Chr1 | 16635626 | 16635637 | 11 | |
| Deletion | Chr10 | 16885889 | 16885896 | 7 | |
| Deletion | Chr4 | 17125893 | 17125894 | 1 | OsKitaake04g083500 |
| Deletion | Chr8 | 18556963 | 18556973 | 10 | |
| Deletion | Chr3 | 21240710 | 21240717 | 7 | |
| Deletion | Chr9 | 21754998 | 21754999 | 1 | |
| Deletion | Chr9 | 21776724 | 21776727 | 3 | |
| Deletion | Chr1 | 23809933 | 23809943 | 10 | OsKitaake01g228600 |
| Deletion | Chr2 | 27593520 | 27593527 | 7 | |
| Deletion | Chr3 | 29908883 | 29908884 | 1 | |
| Deletion | Chr2 | 31023438 | 31023439 | 1 |
Insertions: 5