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Mutant Information

Mutant Name	FN3595-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3595-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2281580 C-T Hetero INTERGENIC
SBS Chr1 2596992 A-G Hetero UTR_3_PRIME
SBS Chr1 22017489 G-A Hetero INTERGENIC
SBS Chr2 22214104 C-A Hetero INTERGENIC
SBS Chr2 24228599 T-A Hetero INTERGENIC
SBS Chr2 24892627 G-A Hetero INTERGENIC
SBS Chr3 20432534 C-T Hetero INTERGENIC
SBS Chr5 4750865 G-A Homo INTERGENIC
SBS Chr5 24772129 A-G Hetero INTERGENIC
SBS Chr6 5417719 T-C Homo INTRON
SBS Chr6 13440471 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g141600
SBS Chr6 13440472 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g141600
SBS Chr6 20755650 C-T Hetero INTERGENIC
SBS Chr7 20457199 G-C Homo INTERGENIC
SBS Chr7 23053930 A-G Homo INTRON
SBS Chr7 25292137 G-T Hetero INTERGENIC
SBS Chr8 3332849 T-C Homo UTR_3_PRIME
SBS Chr8 7867414 T-C Hetero INTERGENIC
SBS Chr8 9616986 T-C Hetero INTERGENIC
SBS Chr9 890083 A-T Hetero INTRON
SBS Chr9 8744573 C-G Hetero INTERGENIC
SBS Chr9 8795280 T-A Hetero INTERGENIC
SBS Chr10 18907017 T-A Homo INTERGENIC
SBS Chr11 8993877 G-C Hetero INTERGENIC
SBS Chr11 18243218 C-T Hetero INTERGENIC
SBS Chr12 13660297 C-A Hetero INTERGENIC
SBS Chr12 21257412 G-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 5783622 5783630 8
Deletion Chr4 8173657 8173659 2
Deletion Chr4 8435331 8435332 1
Deletion Chr8 14624436 14624438 2
Deletion Chr1 16010001 16070000 59999 3
Deletion Chr7 19533439 19533443 4
Deletion Chr6 20736823 20736824 1
Deletion Chr10 20989088 20989089 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 16354187 16354192 4

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 1455113 1689311
Inversion Chr5 24225935 24494718 2
Inversion Chr5 24225951 24494720 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13260857 Chr4 9669275
Translocation Chr10 15075514 Chr1 43075107 2
Translocation Chr10 15076156 Chr1 43075102 2
Translocation Chr11 26952296 Chr7 27983235 OsKitaake07g263400
Translocation Chr7 27983233 Chr5 40197 2
Translocation Chr7 27983413 Chr1 16012164 OsKitaake07g263400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2281580	C-T	Hetero	INTERGENIC
SBS	Chr1	2596992	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	22017489	G-A	Hetero	INTERGENIC
SBS	Chr2	22214104	C-A	Hetero	INTERGENIC
SBS	Chr2	24228599	T-A	Hetero	INTERGENIC
SBS	Chr2	24892627	G-A	Hetero	INTERGENIC
SBS	Chr3	20432534	C-T	Hetero	INTERGENIC
SBS	Chr5	4750865	G-A	Homo	INTERGENIC
SBS	Chr5	24772129	A-G	Hetero	INTERGENIC
SBS	Chr6	5417719	T-C	Homo	INTRON
SBS	Chr6	13440471	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g141600
SBS	Chr6	13440472	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g141600
SBS	Chr6	20755650	C-T	Hetero	INTERGENIC
SBS	Chr7	20457199	G-C	Homo	INTERGENIC
SBS	Chr7	23053930	A-G	Homo	INTRON
SBS	Chr7	25292137	G-T	Hetero	INTERGENIC
SBS	Chr8	3332849	T-C	Homo	UTR_3_PRIME
SBS	Chr8	7867414	T-C	Hetero	INTERGENIC
SBS	Chr8	9616986	T-C	Hetero	INTERGENIC
SBS	Chr9	890083	A-T	Hetero	INTRON
SBS	Chr9	8744573	C-G	Hetero	INTERGENIC
SBS	Chr9	8795280	T-A	Hetero	INTERGENIC
SBS	Chr10	18907017	T-A	Homo	INTERGENIC
SBS	Chr11	8993877	G-C	Hetero	INTERGENIC
SBS	Chr11	18243218	C-T	Hetero	INTERGENIC
SBS	Chr12	13660297	C-A	Hetero	INTERGENIC
SBS	Chr12	21257412	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	5783622	5783630	8
Deletion	Chr4	8173657	8173659	2
Deletion	Chr4	8435331	8435332	1
Deletion	Chr8	14624436	14624438	2
Deletion	Chr1	16010001	16070000	59999	3
Deletion	Chr7	19533439	19533443	4
Deletion	Chr6	20736823	20736824	1
Deletion	Chr10	20989088	20989089	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1455113	1689311
Inversion	Chr5	24225935	24494718	2
Inversion	Chr5	24225951	24494720	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes