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Mutant Information

Mutant Name	FN3596-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3596-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9745623 A-T Hetero INTERGENIC
SBS Chr1 18403813 T-A Hetero INTERGENIC
SBS Chr1 18403815 G-T Hetero INTERGENIC
SBS Chr2 3727894 C-G Homo INTERGENIC
SBS Chr2 9785956 G-A Homo INTERGENIC
SBS Chr2 10667377 T-C Homo INTERGENIC
SBS Chr2 16362734 T-C Homo INTERGENIC
SBS Chr3 6694717 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 27246217 C-A Hetero INTERGENIC
SBS Chr3 36289482 C-T Homo INTERGENIC
SBS Chr4 54070 C-T Hetero INTERGENIC
SBS Chr4 6066314 C-T Hetero INTERGENIC
SBS Chr4 8994291 C-A Hetero INTERGENIC
SBS Chr5 10214744 T-C Hetero INTERGENIC
SBS Chr5 13504918 A-G Homo INTERGENIC
SBS Chr5 17536961 C-T Hetero INTERGENIC
SBS Chr6 9498914 G-A Hetero INTRON
SBS Chr6 18722860 C-T Hetero INTERGENIC
SBS Chr6 26936551 C-A Homo INTERGENIC
SBS Chr7 17655698 T-C Homo INTERGENIC
SBS Chr7 23079666 G-A Hetero INTERGENIC
SBS Chr8 23633546 T-A Hetero INTERGENIC
SBS Chr9 14347815 C-T Hetero INTERGENIC
SBS Chr9 14878175 A-G Hetero INTERGENIC
SBS Chr9 17596466 A-C Hetero INTRON
SBS Chr10 10020328 C-T Hetero INTERGENIC
SBS Chr11 19524197 G-A Hetero INTERGENIC
SBS Chr12 5177135 A-G Hetero INTERGENIC
SBS Chr12 12045840 C-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1421570 1421585 15
Deletion Chr3 2659945 2659951 6
Deletion Chr4 6813198 6813199 1
Deletion Chr4 7715262 7715271 9
Deletion Chr4 8303744 8303745 1
Deletion Chr3 12762963 12762975 12
Deletion Chr12 14161724 14161725 1
Deletion Chr8 17264253 17264339 86
Deletion Chr10 19027593 19027594 1
Deletion Chr4 19795001 19828000 32999 2
Deletion Chr10 20308561 20308579 18
Deletion Chr12 20502368 20502369 1
Deletion Chr8 21365613 21365624 11
Deletion Chr2 22671076 22671077 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43802320 43802323 2
Insertion Chr1 44244958 44244961 2
Insertion Chr7 17395674 17395677 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 8788717 8930810
Inversion Chr2 8788727 8930814
Inversion Chr6 18732350 18877181
Inversion Chr1 19780676 19799723
Inversion Chr3 36429480 36919559 OsKitaake03g404400
Inversion Chr3 36429482 36919560 OsKitaake03g404400

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 13291876 Chr8 4222993

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9745623	A-T	Hetero	INTERGENIC
SBS	Chr1	18403813	T-A	Hetero	INTERGENIC
SBS	Chr1	18403815	G-T	Hetero	INTERGENIC
SBS	Chr2	3727894	C-G	Homo	INTERGENIC
SBS	Chr2	9785956	G-A	Homo	INTERGENIC
SBS	Chr2	10667377	T-C	Homo	INTERGENIC
SBS	Chr2	16362734	T-C	Homo	INTERGENIC
SBS	Chr3	6694717	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	27246217	C-A	Hetero	INTERGENIC
SBS	Chr3	36289482	C-T	Homo	INTERGENIC
SBS	Chr4	54070	C-T	Hetero	INTERGENIC
SBS	Chr4	6066314	C-T	Hetero	INTERGENIC
SBS	Chr4	8994291	C-A	Hetero	INTERGENIC
SBS	Chr5	10214744	T-C	Hetero	INTERGENIC
SBS	Chr5	13504918	A-G	Homo	INTERGENIC
SBS	Chr5	17536961	C-T	Hetero	INTERGENIC
SBS	Chr6	9498914	G-A	Hetero	INTRON
SBS	Chr6	18722860	C-T	Hetero	INTERGENIC
SBS	Chr6	26936551	C-A	Homo	INTERGENIC
SBS	Chr7	17655698	T-C	Homo	INTERGENIC
SBS	Chr7	23079666	G-A	Hetero	INTERGENIC
SBS	Chr8	23633546	T-A	Hetero	INTERGENIC
SBS	Chr9	14347815	C-T	Hetero	INTERGENIC
SBS	Chr9	14878175	A-G	Hetero	INTERGENIC
SBS	Chr9	17596466	A-C	Hetero	INTRON
SBS	Chr10	10020328	C-T	Hetero	INTERGENIC
SBS	Chr11	19524197	G-A	Hetero	INTERGENIC
SBS	Chr12	5177135	A-G	Hetero	INTERGENIC
SBS	Chr12	12045840	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1421570	1421585	15
Deletion	Chr3	2659945	2659951	6
Deletion	Chr4	6813198	6813199	1
Deletion	Chr4	7715262	7715271	9
Deletion	Chr4	8303744	8303745	1
Deletion	Chr3	12762963	12762975	12
Deletion	Chr12	14161724	14161725	1
Deletion	Chr8	17264253	17264339	86
Deletion	Chr10	19027593	19027594	1
Deletion	Chr4	19795001	19828000	32999	2
Deletion	Chr10	20308561	20308579	18
Deletion	Chr12	20502368	20502369	1
Deletion	Chr8	21365613	21365624	11
Deletion	Chr2	22671076	22671077	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	8788717	8930810
Inversion	Chr2	8788727	8930814
Inversion	Chr6	18732350	18877181
Inversion	Chr1	19780676	19799723
Inversion	Chr3	36429480	36919559	OsKitaake03g404400
Inversion	Chr3	36429482	36919560	OsKitaake03g404400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes