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| Mutant Information |
|---|
| Mutant Name | FN3597-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3597-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 20
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6281976 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 16220611 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 33232628 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 33232629 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 34600607 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 36411873 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 41356401 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18535241 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 20740600 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9175482 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 13234419 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 17086669 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 25520054 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 225984 | G-A | Homo | INTRON | |
| SBS | Chr8 | 21795370 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 24196828 | G-C | Homo | INTRON | |
| SBS | Chr11 | 3655351 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 4817219 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 1307894 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 24751943 | G-T | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 7349680 | 7349689 | 9 | |
| Deletion | Chr3 | 9897202 | 9897208 | 6 | |
| Deletion | Chr9 | 10316889 | 10316890 | 1 | |
| Deletion | Chr5 | 13977806 | 13977808 | 2 | |
| Deletion | Chr3 | 16662605 | 16662608 | 3 | |
| Deletion | Chr5 | 16679482 | 16679485 | 3 | |
| Deletion | Chr3 | 20197918 | 20197925 | 7 | |
| Deletion | Chr5 | 22931438 | 22931452 | 14 | |
| Deletion | Chr12 | 23915962 | 23915986 | 24 | |
| Deletion | Chr6 | 25210213 | 25210217 | 4 | |
| Deletion | Chr11 | 28673001 | 28678000 | 4999 | OsKitaake11g234900 |
| Deletion | Chr2 | 35228101 | 35228104 | 3 | |
| Deletion | Chr2 | 35361276 | 35361286 | 10 | |
| Deletion | Chr1 | 36042559 | 36042580 | 21 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 20346644 | 20346647 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 20681459 | 20852773 | OsKitaake09g177900 |
| Inversion | Chr9 | 20682125 | 20853928 | OsKitaake09g178000 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 20681468 | Chr4 | 31981956 | OsKitaake04g253700 |
| Translocation | Chr9 | 20682119 | Chr4 | 31981935 | OsKitaake04g253700 |
| Translocation | Chr12 | 25002235 | Chr2 | 15681159 | |
| Translocation | Chr12 | 25003163 | Chr9 | 20853921 | OsKitaake09g178000 |