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Mutant Information

Mutant Name	FN3598-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3598-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11171981 G-T Hetero INTERGENIC
SBS Chr1 32610905 C-A Homo INTERGENIC
SBS Chr2 15946097 C-A Hetero INTERGENIC
SBS Chr2 27395574 A-T Hetero INTERGENIC
SBS Chr2 29141803 C-T Hetero INTERGENIC
SBS Chr2 29442830 A-G Homo UTR_3_PRIME
SBS Chr3 7429796 C-T Hetero INTERGENIC
SBS Chr3 16737455 G-T Hetero INTERGENIC
SBS Chr4 2983495 G-A Hetero INTERGENIC
SBS Chr4 5594513 G-A Hetero INTERGENIC
SBS Chr4 9950382 G-A Hetero INTERGENIC
SBS Chr4 28505451 T-A Homo UTR_3_PRIME
SBS Chr4 28505452 G-A Homo UTR_3_PRIME
SBS Chr4 29625405 G-A Homo INTERGENIC
SBS Chr4 33998032 T-A Homo INTERGENIC
SBS Chr4 33998033 A-T Homo INTERGENIC
SBS Chr5 17027142 C-T Homo UTR_5_PRIME
SBS Chr5 24948232 G-A Hetero INTERGENIC
SBS Chr6 7875676 A-T Hetero INTERGENIC
SBS Chr6 14025254 G-A Hetero INTERGENIC
SBS Chr6 23717552 G-A Homo INTERGENIC
SBS Chr7 9733829 C-T Hetero INTERGENIC
SBS Chr7 24216545 G-T Hetero INTERGENIC
SBS Chr7 24220117 G-T Hetero UTR_5_PRIME
SBS Chr7 26040202 T-G Hetero INTERGENIC
SBS Chr7 27707056 C-T Hetero INTRON
SBS Chr8 5785329 T-G Homo INTERGENIC
SBS Chr8 6015515 A-C Homo UTR_5_PRIME
SBS Chr8 7980002 G-A Homo NON_SYNONYMOUS_CODING OsKitaake08g073400
SBS Chr8 7980003 C-A Homo NON_SYNONYMOUS_CODING OsKitaake08g073400
SBS Chr9 18285679 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g142400
SBS Chr11 2651575 T-A Hetero INTRON
SBS Chr12 2858927 C-G Homo INTERGENIC
SBS Chr12 13547412 C-T Hetero INTERGENIC
SBS Chr12 13767498 A-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 5942398 5942404 6
Deletion Chr5 7306104 7306107 3
Deletion Chr11 7832452 7832453 1 OsKitaake11g086900
Deletion Chr7 10146108 10146111 3
Deletion Chr11 10675854 10675855 1
Deletion Chr2 12026101 12026118 17
Deletion Chr1 13405210 13405213 3
Deletion Chr4 14110300 14110306 6
Deletion Chr10 16605277 16605284 7
Deletion Chr8 16679361 16679362 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 16138059 16138062 2
Insertion Chr6 30975185 30975188 2
Insertion Chr11 8578641 8578644 2
Insertion Chr11 18046770 18046773 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 12732371 12857448
Inversion Chr4 13949927 13953999
Inversion Chr4 13950491 13954041

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 14559578 Chr1 37057083 OsKitaake01g394900
Translocation Chr7 14559599 Chr1 37056174 OsKitaake01g394900
Translocation Chr7 23662973 Chr6 15663674 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11171981	G-T	Hetero	INTERGENIC
SBS	Chr1	32610905	C-A	Homo	INTERGENIC
SBS	Chr2	15946097	C-A	Hetero	INTERGENIC
SBS	Chr2	27395574	A-T	Hetero	INTERGENIC
SBS	Chr2	29141803	C-T	Hetero	INTERGENIC
SBS	Chr2	29442830	A-G	Homo	UTR_3_PRIME
SBS	Chr3	7429796	C-T	Hetero	INTERGENIC
SBS	Chr3	16737455	G-T	Hetero	INTERGENIC
SBS	Chr4	2983495	G-A	Hetero	INTERGENIC
SBS	Chr4	5594513	G-A	Hetero	INTERGENIC
SBS	Chr4	9950382	G-A	Hetero	INTERGENIC
SBS	Chr4	28505451	T-A	Homo	UTR_3_PRIME
SBS	Chr4	28505452	G-A	Homo	UTR_3_PRIME
SBS	Chr4	29625405	G-A	Homo	INTERGENIC
SBS	Chr4	33998032	T-A	Homo	INTERGENIC
SBS	Chr4	33998033	A-T	Homo	INTERGENIC
SBS	Chr5	17027142	C-T	Homo	UTR_5_PRIME
SBS	Chr5	24948232	G-A	Hetero	INTERGENIC
SBS	Chr6	7875676	A-T	Hetero	INTERGENIC
SBS	Chr6	14025254	G-A	Hetero	INTERGENIC
SBS	Chr6	23717552	G-A	Homo	INTERGENIC
SBS	Chr7	9733829	C-T	Hetero	INTERGENIC
SBS	Chr7	24216545	G-T	Hetero	INTERGENIC
SBS	Chr7	24220117	G-T	Hetero	UTR_5_PRIME
SBS	Chr7	26040202	T-G	Hetero	INTERGENIC
SBS	Chr7	27707056	C-T	Hetero	INTRON
SBS	Chr8	5785329	T-G	Homo	INTERGENIC
SBS	Chr8	6015515	A-C	Homo	UTR_5_PRIME
SBS	Chr8	7980002	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g073400
SBS	Chr8	7980003	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g073400
SBS	Chr9	18285679	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g142400
SBS	Chr11	2651575	T-A	Hetero	INTRON
SBS	Chr12	2858927	C-G	Homo	INTERGENIC
SBS	Chr12	13547412	C-T	Hetero	INTERGENIC
SBS	Chr12	13767498	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	5942398	5942404	6
Deletion	Chr5	7306104	7306107	3
Deletion	Chr11	7832452	7832453	1	OsKitaake11g086900
Deletion	Chr7	10146108	10146111	3
Deletion	Chr11	10675854	10675855	1
Deletion	Chr2	12026101	12026118	17
Deletion	Chr1	13405210	13405213	3
Deletion	Chr4	14110300	14110306	6
Deletion	Chr10	16605277	16605284	7
Deletion	Chr8	16679361	16679362	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	12732371	12857448
Inversion	Chr4	13949927	13953999
Inversion	Chr4	13950491	13954041

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes