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Mutant Information

Mutant Name	FN3599-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3599-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17877981 G-C Homo INTERGENIC
SBS Chr1 34469540 G-A Hetero INTRON
SBS Chr1 40817449 C-G Hetero UTR_3_PRIME
SBS Chr2 2425828 C-T Homo INTRON
SBS Chr2 11476635 C-T Homo INTERGENIC
SBS Chr3 1928613 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 3745389 A-G Hetero INTERGENIC
SBS Chr3 10339778 T-A Hetero INTERGENIC
SBS Chr3 14514688 A-T Hetero INTERGENIC
SBS Chr3 14514689 A-T Hetero INTERGENIC
SBS Chr3 17769188 C-T Homo INTERGENIC
SBS Chr3 18724095 G-A Homo INTERGENIC
SBS Chr3 25852072 T-A Hetero INTERGENIC
SBS Chr3 31364351 A-C Hetero INTRON
SBS Chr4 17121683 C-T Hetero INTERGENIC
SBS Chr4 28518379 G-T Hetero INTERGENIC
SBS Chr5 1033355 A-G Hetero UTR_3_PRIME
SBS Chr5 19253236 T-A Hetero INTERGENIC
SBS Chr5 19253237 A-C Hetero INTERGENIC
SBS Chr5 19975074 T-A Hetero UTR_5_PRIME
SBS Chr5 20421967 T-A Homo INTERGENIC
SBS Chr5 21925775 C-T Hetero INTERGENIC
SBS Chr6 19836266 G-A Homo INTERGENIC
SBS Chr6 20390035 C-T Hetero INTERGENIC
SBS Chr7 19223071 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g155900
SBS Chr7 23550423 C-G Hetero INTERGENIC
SBS Chr7 27797703 A-C Hetero SPLICE_SITE_REGION
SBS Chr8 589347 G-A Hetero UTR_5_PRIME
SBS Chr8 2127367 C-T Hetero INTERGENIC
SBS Chr8 12979446 A-G Hetero INTERGENIC
SBS Chr8 17139865 G-A Hetero INTERGENIC
SBS Chr8 21205188 A-G Hetero INTERGENIC
SBS Chr9 12168073 G-A Homo INTERGENIC
SBS Chr9 22056172 C-A Hetero INTRON
SBS Chr9 22056173 C-A Hetero INTRON
SBS Chr10 861910 C-T Hetero INTERGENIC
SBS Chr11 12628207 G-A Hetero INTERGENIC
SBS Chr11 14674067 G-A Homo INTERGENIC
SBS Chr11 26576682 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 10878268 C-A Homo INTERGENIC
SBS Chr12 11917910 C-G Hetero UTR_5_PRIME
SBS Chr12 22133020 A-C Hetero INTRON
SBS Chr12 22413968 T-C Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 803425 803438 13
Deletion Chr2 1048024 1048025 1
Deletion Chr8 1507761 1507766 5
Deletion Chr1 3653119 3653120 1 OsKitaake01g049000
Deletion Chr4 6442830 6442831 1
Deletion Chr6 6835332 6835341 9
Deletion Chr7 6870021 6870026 5
Deletion Chr3 9091866 9091892 26 OsKitaake03g124700
Deletion Chr11 12141030 12141034 4
Deletion Chr6 13373675 13373680 5
Deletion Chr3 14501035 14501039 4
Deletion Chr11 15688445 15688451 6
Deletion Chr2 17807197 17807201 4
Deletion Chr5 19538959 19538963 4
Deletion Chr12 20536533 20536554 21
Deletion Chr4 20560750 20560756 6
Deletion Chr2 24201001 24234000 32999 9
Deletion Chr2 31206508 31206516 8

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37597514 37597517 2
Insertion Chr3 31983620 31983624 3
Insertion Chr5 3714656 3714659 2
Insertion Chr6 2801233 2801236 2
Insertion Chr9 5237991 5237994 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 12397306 13147062 OsKitaake06g132400
Inversion Chr6 12397320 13147086 OsKitaake06g132400

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 16479168 Chr1 25569193 OsKitaake01g248100
Translocation Chr4 16479620 Chr1 25569189 OsKitaake01g248100
Translocation Chr11 26636527 Chr9 22751241 OsKitaake11g216700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17877981	G-C	Homo	INTERGENIC
SBS	Chr1	34469540	G-A	Hetero	INTRON
SBS	Chr1	40817449	C-G	Hetero	UTR_3_PRIME
SBS	Chr2	2425828	C-T	Homo	INTRON
SBS	Chr2	11476635	C-T	Homo	INTERGENIC
SBS	Chr3	1928613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	3745389	A-G	Hetero	INTERGENIC
SBS	Chr3	10339778	T-A	Hetero	INTERGENIC
SBS	Chr3	14514688	A-T	Hetero	INTERGENIC
SBS	Chr3	14514689	A-T	Hetero	INTERGENIC
SBS	Chr3	17769188	C-T	Homo	INTERGENIC
SBS	Chr3	18724095	G-A	Homo	INTERGENIC
SBS	Chr3	25852072	T-A	Hetero	INTERGENIC
SBS	Chr3	31364351	A-C	Hetero	INTRON
SBS	Chr4	17121683	C-T	Hetero	INTERGENIC
SBS	Chr4	28518379	G-T	Hetero	INTERGENIC
SBS	Chr5	1033355	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	19253236	T-A	Hetero	INTERGENIC
SBS	Chr5	19253237	A-C	Hetero	INTERGENIC
SBS	Chr5	19975074	T-A	Hetero	UTR_5_PRIME
SBS	Chr5	20421967	T-A	Homo	INTERGENIC
SBS	Chr5	21925775	C-T	Hetero	INTERGENIC
SBS	Chr6	19836266	G-A	Homo	INTERGENIC
SBS	Chr6	20390035	C-T	Hetero	INTERGENIC
SBS	Chr7	19223071	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g155900
SBS	Chr7	23550423	C-G	Hetero	INTERGENIC
SBS	Chr7	27797703	A-C	Hetero	SPLICE_SITE_REGION
SBS	Chr8	589347	G-A	Hetero	UTR_5_PRIME
SBS	Chr8	2127367	C-T	Hetero	INTERGENIC
SBS	Chr8	12979446	A-G	Hetero	INTERGENIC
SBS	Chr8	17139865	G-A	Hetero	INTERGENIC
SBS	Chr8	21205188	A-G	Hetero	INTERGENIC
SBS	Chr9	12168073	G-A	Homo	INTERGENIC
SBS	Chr9	22056172	C-A	Hetero	INTRON
SBS	Chr9	22056173	C-A	Hetero	INTRON
SBS	Chr10	861910	C-T	Hetero	INTERGENIC
SBS	Chr11	12628207	G-A	Hetero	INTERGENIC
SBS	Chr11	14674067	G-A	Homo	INTERGENIC
SBS	Chr11	26576682	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	10878268	C-A	Homo	INTERGENIC
SBS	Chr12	11917910	C-G	Hetero	UTR_5_PRIME
SBS	Chr12	22133020	A-C	Hetero	INTRON
SBS	Chr12	22413968	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	803425	803438	13
Deletion	Chr2	1048024	1048025	1
Deletion	Chr8	1507761	1507766	5
Deletion	Chr1	3653119	3653120	1	OsKitaake01g049000
Deletion	Chr4	6442830	6442831	1
Deletion	Chr6	6835332	6835341	9
Deletion	Chr7	6870021	6870026	5
Deletion	Chr3	9091866	9091892	26	OsKitaake03g124700
Deletion	Chr11	12141030	12141034	4
Deletion	Chr6	13373675	13373680	5
Deletion	Chr3	14501035	14501039	4
Deletion	Chr11	15688445	15688451	6
Deletion	Chr2	17807197	17807201	4
Deletion	Chr5	19538959	19538963	4
Deletion	Chr12	20536533	20536554	21
Deletion	Chr4	20560750	20560756	6
Deletion	Chr2	24201001	24234000	32999	9
Deletion	Chr2	31206508	31206516	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	12397306	13147062	OsKitaake06g132400
Inversion	Chr6	12397320	13147086	OsKitaake06g132400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes