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Mutant Information

Mutant Name	FN3600-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3600-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 11178383 G-C Homo INTERGENIC
SBS Chr3 5197390 G-A Hetero INTERGENIC
SBS Chr3 6985711 G-A Hetero INTERGENIC
SBS Chr3 10527831 T-C Hetero UTR_3_PRIME
SBS Chr3 19225004 C-G Hetero INTERGENIC
SBS Chr4 13709977 T-C Homo INTERGENIC
SBS Chr4 15976724 C-G Hetero INTERGENIC
SBS Chr4 28042852 C-T Hetero INTERGENIC
SBS Chr5 14661183 C-T Hetero INTERGENIC
SBS Chr6 9939196 C-T Hetero INTERGENIC
SBS Chr6 13450172 G-A Homo INTRON
SBS Chr6 20749890 G-A Hetero INTERGENIC
SBS Chr6 20907089 G-T Hetero INTERGENIC
SBS Chr6 20913120 C-T Hetero INTERGENIC
SBS Chr7 4302707 T-C Homo INTRON
SBS Chr7 7174965 C-T Homo INTERGENIC
SBS Chr7 20097365 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g165000
SBS Chr8 5071149 T-C Hetero INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 20210479 C-T Hetero INTERGENIC
SBS Chr9 20099948 G-A Hetero INTRON
SBS Chr11 5315784 C-A Hetero INTRON
SBS Chr12 21776433 C-A Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2137966 2137969 3
Deletion Chr7 6737355 6737373 18
Deletion Chr6 6786146 6786148 2
Deletion Chr3 17319469 17319470 1
Deletion Chr11 19135689 19135692 3
Deletion Chr3 21540217 21540220 3
Deletion Chr4 30777452 30777455 3
Deletion Chr3 36618476 36618477 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 9141525 9210162 OsKitaake03g124900
Inversion Chr3 9210165 9230484 OsKitaake03g126200
Inversion Chr1 13212807 13530113 OsKitaake01g157100
Inversion Chr1 13212810 13530600 OsKitaake01g157100
Inversion Chr2 32467584 32595878 OsKitaake02g332400
Inversion Chr2 32467590 32595890 OsKitaake02g332400

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 25867797 Chr1 13530592 OsKitaake01g157100
Translocation Chr8 25867814 Chr1 13530118 OsKitaake01g157100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	11178383	G-C	Homo	INTERGENIC
SBS	Chr3	5197390	G-A	Hetero	INTERGENIC
SBS	Chr3	6985711	G-A	Hetero	INTERGENIC
SBS	Chr3	10527831	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	19225004	C-G	Hetero	INTERGENIC
SBS	Chr4	13709977	T-C	Homo	INTERGENIC
SBS	Chr4	15976724	C-G	Hetero	INTERGENIC
SBS	Chr4	28042852	C-T	Hetero	INTERGENIC
SBS	Chr5	14661183	C-T	Hetero	INTERGENIC
SBS	Chr6	9939196	C-T	Hetero	INTERGENIC
SBS	Chr6	13450172	G-A	Homo	INTRON
SBS	Chr6	20749890	G-A	Hetero	INTERGENIC
SBS	Chr6	20907089	G-T	Hetero	INTERGENIC
SBS	Chr6	20913120	C-T	Hetero	INTERGENIC
SBS	Chr7	4302707	T-C	Homo	INTRON
SBS	Chr7	7174965	C-T	Homo	INTERGENIC
SBS	Chr7	20097365	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g165000
SBS	Chr8	5071149	T-C	Hetero	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	20210479	C-T	Hetero	INTERGENIC
SBS	Chr9	20099948	G-A	Hetero	INTRON
SBS	Chr11	5315784	C-A	Hetero	INTRON
SBS	Chr12	21776433	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2137966	2137969	3
Deletion	Chr7	6737355	6737373	18
Deletion	Chr6	6786146	6786148	2
Deletion	Chr3	17319469	17319470	1
Deletion	Chr11	19135689	19135692	3
Deletion	Chr3	21540217	21540220	3
Deletion	Chr4	30777452	30777455	3
Deletion	Chr3	36618476	36618477	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	9141525	9210162	OsKitaake03g124900
Inversion	Chr3	9210165	9230484	OsKitaake03g126200
Inversion	Chr1	13212807	13530113	OsKitaake01g157100
Inversion	Chr1	13212810	13530600	OsKitaake01g157100
Inversion	Chr2	32467584	32595878	OsKitaake02g332400
Inversion	Chr2	32467590	32595890	OsKitaake02g332400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes