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Mutant Information

Mutant Name	FN3601-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3601-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 17

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24069739 T-C Homo UTR_3_PRIME
SBS Chr1 24069778 T-A Homo INTERGENIC
SBS Chr2 8463209 C-G Hetero INTERGENIC
SBS Chr2 23441310 A-G Homo INTRON
SBS Chr3 7108159 A-T Homo UTR_5_PRIME
SBS Chr4 1630845 G-C Hetero INTERGENIC
SBS Chr6 18472524 C-T Homo INTERGENIC
SBS Chr7 27372263 G-A Hetero INTERGENIC
SBS Chr8 9165222 G-A Hetero INTRON
SBS Chr8 28362022 C-T Hetero UTR_3_PRIME
SBS Chr9 8509319 C-T Hetero INTERGENIC
SBS Chr9 14157501 T-G Hetero INTERGENIC
SBS Chr10 5706917 G-A Hetero INTERGENIC
SBS Chr10 8641912 T-C Hetero INTERGENIC
SBS Chr11 25672953 C-T Hetero INTRON
SBS Chr11 27916787 A-G Hetero INTERGENIC
SBS Chr12 8214125 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1088711 1088712 1
Deletion Chr5 1697620 1697622 2
Deletion Chr12 2744929 2744945 16
Deletion Chr11 4232510 4232512 2
Deletion Chr3 6559149 6559159 10
Deletion Chr12 10849802 10849805 3
Deletion Chr12 14243001 14358000 114999 4
Deletion Chr5 15411109 15411112 3
Deletion Chr10 16898770 16898771 1
Deletion Chr12 20484971 20484979 8
Deletion Chr9 21505331 21505347 16
Deletion Chr6 29616840 29616854 14
Deletion Chr3 34482221 34482230 9
Deletion Chr4 34640473 34640479 6 OsKitaake04g289200

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 10318112 10318144 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24069739	T-C	Homo	UTR_3_PRIME
SBS	Chr1	24069778	T-A	Homo	INTERGENIC
SBS	Chr2	8463209	C-G	Hetero	INTERGENIC
SBS	Chr2	23441310	A-G	Homo	INTRON
SBS	Chr3	7108159	A-T	Homo	UTR_5_PRIME
SBS	Chr4	1630845	G-C	Hetero	INTERGENIC
SBS	Chr6	18472524	C-T	Homo	INTERGENIC
SBS	Chr7	27372263	G-A	Hetero	INTERGENIC
SBS	Chr8	9165222	G-A	Hetero	INTRON
SBS	Chr8	28362022	C-T	Hetero	UTR_3_PRIME
SBS	Chr9	8509319	C-T	Hetero	INTERGENIC
SBS	Chr9	14157501	T-G	Hetero	INTERGENIC
SBS	Chr10	5706917	G-A	Hetero	INTERGENIC
SBS	Chr10	8641912	T-C	Hetero	INTERGENIC
SBS	Chr11	25672953	C-T	Hetero	INTRON
SBS	Chr11	27916787	A-G	Hetero	INTERGENIC
SBS	Chr12	8214125	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1088711	1088712	1
Deletion	Chr5	1697620	1697622	2
Deletion	Chr12	2744929	2744945	16
Deletion	Chr11	4232510	4232512	2
Deletion	Chr3	6559149	6559159	10
Deletion	Chr12	10849802	10849805	3
Deletion	Chr12	14243001	14358000	114999	4
Deletion	Chr5	15411109	15411112	3
Deletion	Chr10	16898770	16898771	1
Deletion	Chr12	20484971	20484979	8
Deletion	Chr9	21505331	21505347	16
Deletion	Chr6	29616840	29616854	14
Deletion	Chr3	34482221	34482230	9
Deletion	Chr4	34640473	34640479	6	OsKitaake04g289200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes