Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3606-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3606-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23962152 | G-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 33776013 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 1654365 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 4946150 | A-C | Hetero | INTRON | |
| SBS | Chr2 | 15033246 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 23175726 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 9256245 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 27137771 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 33953934 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 33953936 | C-A | Hetero | INTRON | |
| SBS | Chr4 | 3198914 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 17439055 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18299799 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 30543612 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 6481153 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 19002555 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 1719312 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 7886927 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 19467206 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 20254460 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8806348 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 10631645 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 838074 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20535797 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 20535798 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 9314851 | T-A | Hetero | INTRON | |
| SBS | Chr12 | 11230930 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 17939915 | G-T | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 1363001 | 1384000 | 20999 | OsKitaake05g017100 |
| Deletion | Chr7 | 4780442 | 4780443 | 1 | |
| Deletion | Chr4 | 7144223 | 7144232 | 9 | |
| Deletion | Chr5 | 7236664 | 7236665 | 1 | |
| Deletion | Chr5 | 7381125 | 7381129 | 4 | OsKitaake05g074000 |
| Deletion | Chr1 | 9646001 | 9659000 | 12999 | OsKitaake01g123400 |
| Deletion | Chr6 | 14167771 | 14167782 | 11 | |
| Deletion | Chr4 | 19435001 | 19447000 | 11999 | OsKitaake04g099601 |
| Deletion | Chr6 | 23745590 | 23745611 | 21 | |
| Deletion | Chr3 | 24343901 | 24343907 | 6 | |
| Deletion | Chr3 | 26260001 | 26277000 | 16999 | |
| Deletion | Chr3 | 27104001 | 27129000 | 24999 | 4 |
| Deletion | Chr6 | 29059473 | 29059487 | 14 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 13627464 | 13627467 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 9301717 | 9549192 | OsKitaake03g129700 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 18941994 | Chr1 | 40699622 | 2 |
| Translocation | Chr4 | 18942537 | Chr1 | 40699638 | 2 |