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| Mutant Information |
|---|
| Mutant Name | FN3607-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3607-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14127031 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 27253147 | C-T | Homo | INTRON | |
| SBS | Chr1 | 35870263 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 14749484 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 497376 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 28880366 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 3678695 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 30109234 | T-C | Homo | UTR_5_PRIME | |
| SBS | Chr6 | 27981152 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 29922231 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 30235835 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 11431657 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 11431662 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g106500 |
| SBS | Chr7 | 20948952 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28660444 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 12060050 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7780251 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 15634252 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g110700 |
| SBS | Chr10 | 10781700 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 3626584 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr11 | 5951269 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15145642 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 16912553 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19596565 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 19750541 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20594095 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 26606519 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 2140105 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 5709233 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7281299 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8307003 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 10038365 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13111649 | G-A | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 352256 | 352258 | 2 | |
| Deletion | Chr6 | 4682001 | 4774000 | 91999 | 13 |
| Deletion | Chr11 | 6154656 | 6154659 | 3 | |
| Deletion | Chr11 | 8152001 | 9089000 | 936999 | 59 |
| Deletion | Chr5 | 10640045 | 10640050 | 5 | |
| Deletion | Chr5 | 13318626 | 13318629 | 3 | |
| Deletion | Chr11 | 13806342 | 13806351 | 9 | |
| Deletion | Chr8 | 15898539 | 15898540 | 1 | |
| Deletion | Chr1 | 17249110 | 17249265 | 155 | |
| Deletion | Chr1 | 22641111 | 22641112 | 1 | |
| Deletion | Chr4 | 25359001 | 25365000 | 5999 | 2 |
| Deletion | Chr4 | 30067139 | 30067149 | 10 | |
| Deletion | Chr2 | 30443435 | 30443444 | 9 | OsKitaake02g310300 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 19814079 | 19814082 | 2 | |
| Insertion | Chr12 | 3915185 | 3915188 | 2 | |
| Insertion | Chr11 | 19465609 | 19465612 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 4300591 | 4771733 | |
| Inversion | Chr11 | 7480524 | 8144144 | OsKitaake11g084366 |