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Mutant Information

Mutant Name	FN3610-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3610-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22412902 C-T Homo INTERGENIC
SBS Chr1 40895883 T-C Homo SYNONYMOUS_CODING
SBS Chr2 6615468 A-T Hetero INTERGENIC
SBS Chr2 15659139 A-T Hetero INTERGENIC
SBS Chr2 19168085 A-C Hetero INTERGENIC
SBS Chr2 22451950 T-C Hetero UTR_5_PRIME
SBS Chr2 23921679 G-A Hetero INTERGENIC
SBS Chr3 14491679 C-G Homo INTERGENIC
SBS Chr3 17686540 G-A Homo INTERGENIC
SBS Chr3 33202473 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g354700
SBS Chr4 26170103 G-A Homo UTR_3_PRIME
SBS Chr4 28946349 T-C Hetero INTERGENIC
SBS Chr4 32711844 A-G Hetero SPLICE_SITE_REGION
SBS Chr5 11432017 A-G Homo INTERGENIC
SBS Chr5 12467033 T-A Homo INTERGENIC
SBS Chr5 27839685 C-T Hetero INTERGENIC
SBS Chr6 336130 G-A Hetero INTERGENIC
SBS Chr6 22996149 G-C Hetero INTERGENIC
SBS Chr6 29213660 T-G Hetero INTERGENIC
SBS Chr7 9223779 G-A Homo INTERGENIC
SBS Chr7 14592809 C-T Homo INTERGENIC
SBS Chr8 6939587 A-G Homo NON_SYNONYMOUS_CODING OsKitaake08g069521
SBS Chr9 8671451 G-A Homo INTERGENIC
SBS Chr10 10196317 T-A Homo STOP_GAINED OsKitaake10g059200
SBS Chr10 16863469 C-T Hetero INTERGENIC
SBS Chr11 9968243 C-T Homo INTERGENIC
SBS Chr11 24123146 G-T Hetero INTERGENIC
SBS Chr12 8936711 C-T Hetero INTERGENIC
SBS Chr12 10187979 C-A Hetero INTERGENIC
SBS Chr12 14641488 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 609997 609999 2
Deletion Chr6 2252084 2252086 2
Deletion Chr8 2963347 2963355 8
Deletion Chr1 3802323 3802331 8
Deletion Chr3 6683468 6683485 17
Deletion Chr9 11758340 11758343 3
Deletion Chr11 12487231 12487240 9
Deletion Chr9 15653005 15653009 4
Deletion Chr12 18628995 18628998 3
Deletion Chr2 20891952 20891953 1
Deletion Chr10 23775513 23775520 7
Deletion Chr11 25762862 25762869 7

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 7315150 7315153 2
Insertion Chr12 14779926 14779928 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 20646669 20652119
Inversion Chr6 20646692 20652124

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 22205208 Chr3 25663261
Translocation Chr10 22205282 Chr3 25664217

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22412902	C-T	Homo	INTERGENIC
SBS	Chr1	40895883	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr2	6615468	A-T	Hetero	INTERGENIC
SBS	Chr2	15659139	A-T	Hetero	INTERGENIC
SBS	Chr2	19168085	A-C	Hetero	INTERGENIC
SBS	Chr2	22451950	T-C	Hetero	UTR_5_PRIME
SBS	Chr2	23921679	G-A	Hetero	INTERGENIC
SBS	Chr3	14491679	C-G	Homo	INTERGENIC
SBS	Chr3	17686540	G-A	Homo	INTERGENIC
SBS	Chr3	33202473	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g354700
SBS	Chr4	26170103	G-A	Homo	UTR_3_PRIME
SBS	Chr4	28946349	T-C	Hetero	INTERGENIC
SBS	Chr4	32711844	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr5	11432017	A-G	Homo	INTERGENIC
SBS	Chr5	12467033	T-A	Homo	INTERGENIC
SBS	Chr5	27839685	C-T	Hetero	INTERGENIC
SBS	Chr6	336130	G-A	Hetero	INTERGENIC
SBS	Chr6	22996149	G-C	Hetero	INTERGENIC
SBS	Chr6	29213660	T-G	Hetero	INTERGENIC
SBS	Chr7	9223779	G-A	Homo	INTERGENIC
SBS	Chr7	14592809	C-T	Homo	INTERGENIC
SBS	Chr8	6939587	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g069521
SBS	Chr9	8671451	G-A	Homo	INTERGENIC
SBS	Chr10	10196317	T-A	Homo	STOP_GAINED	OsKitaake10g059200
SBS	Chr10	16863469	C-T	Hetero	INTERGENIC
SBS	Chr11	9968243	C-T	Homo	INTERGENIC
SBS	Chr11	24123146	G-T	Hetero	INTERGENIC
SBS	Chr12	8936711	C-T	Hetero	INTERGENIC
SBS	Chr12	10187979	C-A	Hetero	INTERGENIC
SBS	Chr12	14641488	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	609997	609999	2
Deletion	Chr6	2252084	2252086	2
Deletion	Chr8	2963347	2963355	8
Deletion	Chr1	3802323	3802331	8
Deletion	Chr3	6683468	6683485	17
Deletion	Chr9	11758340	11758343	3
Deletion	Chr11	12487231	12487240	9
Deletion	Chr9	15653005	15653009	4
Deletion	Chr12	18628995	18628998	3
Deletion	Chr2	20891952	20891953	1
Deletion	Chr10	23775513	23775520	7
Deletion	Chr11	25762862	25762869	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	20646669	20652119
Inversion	Chr6	20646692	20652124

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes