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Mutant Information

Mutant Name	FN3613-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3613-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5174276 T-A Hetero INTERGENIC
SBS Chr1 40391058 G-T Hetero INTERGENIC
SBS Chr2 25853471 C-T Hetero INTERGENIC
SBS Chr3 9990901 T-C Homo INTERGENIC
SBS Chr3 14259145 A-G Hetero INTERGENIC
SBS Chr3 16415326 A-G Homo INTERGENIC
SBS Chr3 23275670 G-T Hetero INTERGENIC
SBS Chr3 28461967 C-T Hetero INTERGENIC
SBS Chr3 29389411 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g306600
SBS Chr3 29390046 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g306600
SBS Chr4 4023114 T-A Homo INTERGENIC
SBS Chr4 4023115 G-A Homo INTERGENIC
SBS Chr4 10381938 A-T Homo INTRON
SBS Chr4 13545329 A-G Homo INTERGENIC
SBS Chr4 19760263 C-T Hetero INTERGENIC
SBS Chr4 21903049 T-C Homo NON_SYNONYMOUS_CODING OsKitaake04g126600
SBS Chr5 4105083 A-T Homo INTERGENIC
SBS Chr5 4105085 G-T Homo INTERGENIC
SBS Chr5 18184195 A-G Homo INTERGENIC
SBS Chr6 11935747 T-A Homo INTERGENIC
SBS Chr6 13081391 G-A Hetero INTERGENIC
SBS Chr7 1136746 A-G Hetero INTERGENIC
SBS Chr7 4348558 G-T Hetero INTERGENIC
SBS Chr7 6200845 A-T Hetero INTERGENIC
SBS Chr7 8911105 C-T Hetero INTERGENIC
SBS Chr7 26809174 T-G Homo INTERGENIC
SBS Chr7 29371693 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g282400
SBS Chr8 4011495 C-T Hetero INTERGENIC
SBS Chr8 24515635 C-T Hetero INTERGENIC
SBS Chr9 855253 T-A Homo INTERGENIC
SBS Chr9 1194417 G-T Homo INTRON
SBS Chr9 1958905 C-T Hetero INTERGENIC
SBS Chr9 11734395 T-C Homo INTRON
SBS Chr10 23711725 T-C Hetero INTERGENIC
SBS Chr11 1484831 A-T Homo INTERGENIC
SBS Chr11 1546038 G-A Homo INTERGENIC
SBS Chr11 12701587 T-C Homo INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 103052 103054 2
Deletion Chr6 118749 118756 7
Deletion Chr6 1598059 1598067 8
Deletion Chr6 1881607 1881610 3
Deletion Chr4 3472476 3472477 1
Deletion Chr10 3757244 3757245 1
Deletion Chr4 4023138 4023146 8
Deletion Chr6 5244347 5244359 12
Deletion Chr2 6034557 6034573 16
Deletion Chr6 6168502 6168503 1 OsKitaake06g080900
Deletion Chr9 7127416 7127422 6
Deletion Chr9 8594907 8594911 4
Deletion Chr4 10345670 10345671 1
Deletion Chr3 13052846 13052849 3
Deletion Chr3 16041373 16041374 1
Deletion Chr9 18330894 18330897 3
Deletion Chr5 18946211 18946228 17
Deletion Chr3 21573991 21573999 8
Deletion Chr6 22079164 22079169 5
Deletion Chr4 23532600 23532606 6
Deletion Chr10 23860056 23860057 1
Deletion Chr8 25296001 25328000 31999 7
Deletion Chr4 32990342 32990350 8
Deletion Chr1 40244937 40244938 1
Deletion Chr1 42367369 42367371 2
Deletion Chr1 43668824 43668835 11

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 11405591 11405597 5
Insertion Chr6 8766563 8766566 2
Insertion Chr9 16706381 16706383 1
Insertion Chr11 15922621 15922624 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 18118548 18133907 OsKitaake12g133400
Inversion Chr7 24734944 25090047
Inversion Chr7 24734949 25090044
Inversion Chr1 30322369 31203176 OsKitaake01g312100
Inversion Chr1 30322370 31203179 OsKitaake01g312100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5174276	T-A	Hetero	INTERGENIC
SBS	Chr1	40391058	G-T	Hetero	INTERGENIC
SBS	Chr2	25853471	C-T	Hetero	INTERGENIC
SBS	Chr3	9990901	T-C	Homo	INTERGENIC
SBS	Chr3	14259145	A-G	Hetero	INTERGENIC
SBS	Chr3	16415326	A-G	Homo	INTERGENIC
SBS	Chr3	23275670	G-T	Hetero	INTERGENIC
SBS	Chr3	28461967	C-T	Hetero	INTERGENIC
SBS	Chr3	29389411	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g306600
SBS	Chr3	29390046	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g306600
SBS	Chr4	4023114	T-A	Homo	INTERGENIC
SBS	Chr4	4023115	G-A	Homo	INTERGENIC
SBS	Chr4	10381938	A-T	Homo	INTRON
SBS	Chr4	13545329	A-G	Homo	INTERGENIC
SBS	Chr4	19760263	C-T	Hetero	INTERGENIC
SBS	Chr4	21903049	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g126600
SBS	Chr5	4105083	A-T	Homo	INTERGENIC
SBS	Chr5	4105085	G-T	Homo	INTERGENIC
SBS	Chr5	18184195	A-G	Homo	INTERGENIC
SBS	Chr6	11935747	T-A	Homo	INTERGENIC
SBS	Chr6	13081391	G-A	Hetero	INTERGENIC
SBS	Chr7	1136746	A-G	Hetero	INTERGENIC
SBS	Chr7	4348558	G-T	Hetero	INTERGENIC
SBS	Chr7	6200845	A-T	Hetero	INTERGENIC
SBS	Chr7	8911105	C-T	Hetero	INTERGENIC
SBS	Chr7	26809174	T-G	Homo	INTERGENIC
SBS	Chr7	29371693	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g282400
SBS	Chr8	4011495	C-T	Hetero	INTERGENIC
SBS	Chr8	24515635	C-T	Hetero	INTERGENIC
SBS	Chr9	855253	T-A	Homo	INTERGENIC
SBS	Chr9	1194417	G-T	Homo	INTRON
SBS	Chr9	1958905	C-T	Hetero	INTERGENIC
SBS	Chr9	11734395	T-C	Homo	INTRON
SBS	Chr10	23711725	T-C	Hetero	INTERGENIC
SBS	Chr11	1484831	A-T	Homo	INTERGENIC
SBS	Chr11	1546038	G-A	Homo	INTERGENIC
SBS	Chr11	12701587	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	103052	103054	2
Deletion	Chr6	118749	118756	7
Deletion	Chr6	1598059	1598067	8
Deletion	Chr6	1881607	1881610	3
Deletion	Chr4	3472476	3472477	1
Deletion	Chr10	3757244	3757245	1
Deletion	Chr4	4023138	4023146	8
Deletion	Chr6	5244347	5244359	12
Deletion	Chr2	6034557	6034573	16
Deletion	Chr6	6168502	6168503	1	OsKitaake06g080900
Deletion	Chr9	7127416	7127422	6
Deletion	Chr9	8594907	8594911	4
Deletion	Chr4	10345670	10345671	1
Deletion	Chr3	13052846	13052849	3
Deletion	Chr3	16041373	16041374	1
Deletion	Chr9	18330894	18330897	3
Deletion	Chr5	18946211	18946228	17
Deletion	Chr3	21573991	21573999	8
Deletion	Chr6	22079164	22079169	5
Deletion	Chr4	23532600	23532606	6
Deletion	Chr10	23860056	23860057	1
Deletion	Chr8	25296001	25328000	31999	7
Deletion	Chr4	32990342	32990350	8
Deletion	Chr1	40244937	40244938	1
Deletion	Chr1	42367369	42367371	2
Deletion	Chr1	43668824	43668835	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	18118548	18133907	OsKitaake12g133400
Inversion	Chr7	24734944	25090047
Inversion	Chr7	24734949	25090044
Inversion	Chr1	30322369	31203176	OsKitaake01g312100
Inversion	Chr1	30322370	31203179	OsKitaake01g312100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes