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Mutant Information

Mutant Name	FN3615-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3615-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6744766 T-C Hetero INTERGENIC
SBS Chr1 21449858 G-A Homo INTERGENIC
SBS Chr1 23297879 T-A Homo INTERGENIC
SBS Chr1 24224336 G-A Homo INTERGENIC
SBS Chr2 21803225 G-A Hetero INTERGENIC
SBS Chr3 10294828 G-A Hetero INTERGENIC
SBS Chr3 16752567 C-T Hetero INTERGENIC
SBS Chr4 1443070 A-G Homo INTERGENIC
SBS Chr4 18667668 C-A Homo INTERGENIC
SBS Chr4 19625899 T-A Hetero INTRON
SBS Chr5 9616933 T-C Hetero INTERGENIC
SBS Chr5 27492201 T-C Hetero INTERGENIC
SBS Chr7 2761204 A-G Homo INTERGENIC
SBS Chr7 12433007 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g111300
SBS Chr7 25077996 T-C Hetero UTR_3_PRIME
SBS Chr8 100943 G-A Hetero INTERGENIC
SBS Chr8 19199515 A-G Homo INTERGENIC
SBS Chr9 2503204 G-A Hetero INTERGENIC
SBS Chr10 7289975 C-A Homo INTERGENIC
SBS Chr10 10100388 G-A Homo INTERGENIC
SBS Chr10 15457882 G-A Homo INTERGENIC
SBS Chr11 19073542 T-A Hetero INTRON
SBS Chr12 6851295 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 10275853 C-A Homo INTERGENIC
SBS Chr12 21277467 A-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1797856 1797862 6
Deletion Chr12 4906776 4906783 7
Deletion Chr2 5224521 5224523 2
Deletion Chr4 6354775 6354793 18
Deletion Chr2 6795435 6795439 4
Deletion Chr10 7492352 7492354 2
Deletion Chr1 8201142 8201144 2
Deletion Chr4 8294550 8294552 2
Deletion Chr11 9823552 9823553 1
Deletion Chr11 13885829 13885830 1
Deletion Chr5 16091626 16091628 2
Deletion Chr8 19763334 19763337 3
Deletion Chr12 26407868 26407882 14
Deletion Chr5 28834648 28834649 1
Deletion Chr1 41364127 41364171 44

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25933910 25933913 2
Insertion Chr11 8514857 8514861 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 5920717 5980884 OsKitaake06g077900
Inversion Chr6 5920723 5980889 OsKitaake06g077900
Inversion Chr2 10061710 10746171
Inversion Chr12 19792757 20607948

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6744766	T-C	Hetero	INTERGENIC
SBS	Chr1	21449858	G-A	Homo	INTERGENIC
SBS	Chr1	23297879	T-A	Homo	INTERGENIC
SBS	Chr1	24224336	G-A	Homo	INTERGENIC
SBS	Chr2	21803225	G-A	Hetero	INTERGENIC
SBS	Chr3	10294828	G-A	Hetero	INTERGENIC
SBS	Chr3	16752567	C-T	Hetero	INTERGENIC
SBS	Chr4	1443070	A-G	Homo	INTERGENIC
SBS	Chr4	18667668	C-A	Homo	INTERGENIC
SBS	Chr4	19625899	T-A	Hetero	INTRON
SBS	Chr5	9616933	T-C	Hetero	INTERGENIC
SBS	Chr5	27492201	T-C	Hetero	INTERGENIC
SBS	Chr7	2761204	A-G	Homo	INTERGENIC
SBS	Chr7	12433007	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g111300
SBS	Chr7	25077996	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	100943	G-A	Hetero	INTERGENIC
SBS	Chr8	19199515	A-G	Homo	INTERGENIC
SBS	Chr9	2503204	G-A	Hetero	INTERGENIC
SBS	Chr10	7289975	C-A	Homo	INTERGENIC
SBS	Chr10	10100388	G-A	Homo	INTERGENIC
SBS	Chr10	15457882	G-A	Homo	INTERGENIC
SBS	Chr11	19073542	T-A	Hetero	INTRON
SBS	Chr12	6851295	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	10275853	C-A	Homo	INTERGENIC
SBS	Chr12	21277467	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1797856	1797862	6
Deletion	Chr12	4906776	4906783	7
Deletion	Chr2	5224521	5224523	2
Deletion	Chr4	6354775	6354793	18
Deletion	Chr2	6795435	6795439	4
Deletion	Chr10	7492352	7492354	2
Deletion	Chr1	8201142	8201144	2
Deletion	Chr4	8294550	8294552	2
Deletion	Chr11	9823552	9823553	1
Deletion	Chr11	13885829	13885830	1
Deletion	Chr5	16091626	16091628	2
Deletion	Chr8	19763334	19763337	3
Deletion	Chr12	26407868	26407882	14
Deletion	Chr5	28834648	28834649	1
Deletion	Chr1	41364127	41364171	44

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	5920717	5980884	OsKitaake06g077900
Inversion	Chr6	5920723	5980889	OsKitaake06g077900
Inversion	Chr2	10061710	10746171
Inversion	Chr12	19792757	20607948

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes