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Mutant Information

Mutant Name	FN3626-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3626-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 60

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2856150 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g036400
SBS Chr1 24640616 G-T Hetero INTERGENIC
SBS Chr1 27532602 A-C Hetero INTERGENIC
SBS Chr1 27958199 T-A Hetero INTERGENIC
SBS Chr1 31230029 G-A Hetero UTR_5_PRIME
SBS Chr1 41415919 G-T Hetero INTERGENIC
SBS Chr1 41538543 A-G Hetero INTERGENIC
SBS Chr2 8098953 G-T Hetero INTERGENIC
SBS Chr2 9029676 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g113050
SBS Chr2 12545492 T-C Hetero INTRON
SBS Chr2 13100521 T-A Hetero SYNONYMOUS_CODING
SBS Chr2 15127318 G-A Homo INTERGENIC
SBS Chr2 20863002 A-T Hetero INTERGENIC
SBS Chr2 27136593 A-G Hetero UTR_3_PRIME
SBS Chr2 30359974 G-T Homo INTERGENIC
SBS Chr3 7572250 C-A Hetero INTERGENIC
SBS Chr3 10147709 A-G Hetero INTERGENIC
SBS Chr3 36954045 C-T Homo INTERGENIC
SBS Chr4 5201559 G-A Hetero INTERGENIC
SBS Chr4 13746394 G-A Hetero INTERGENIC
SBS Chr4 14716936 C-T Hetero INTERGENIC
SBS Chr4 14911723 C-T Hetero INTERGENIC
SBS Chr4 19478083 C-T Hetero INTERGENIC
SBS Chr4 26364694 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g188200
SBS Chr4 29376891 C-A Hetero SYNONYMOUS_CODING
SBS Chr4 29458509 C-T Hetero INTERGENIC
SBS Chr5 6657856 C-A Hetero INTERGENIC
SBS Chr5 8236672 G-A Hetero INTERGENIC
SBS Chr5 8236674 T-A Hetero INTERGENIC
SBS Chr6 132855 G-A Hetero INTERGENIC
SBS Chr6 8104479 T-A Homo UTR_3_PRIME
SBS Chr6 15565096 A-G Homo INTERGENIC
SBS Chr6 17749756 A-C Homo INTERGENIC
SBS Chr6 18776249 C-T Homo INTRON
SBS Chr7 4458676 A-T Hetero SPLICE_SITE_REGION
SBS Chr7 14808121 G-T Hetero INTERGENIC
SBS Chr7 14889150 G-A Hetero INTERGENIC
SBS Chr7 20522099 T-G Hetero INTERGENIC
SBS Chr8 20011147 C-A Hetero INTERGENIC
SBS Chr8 23159891 A-T Hetero INTERGENIC
SBS Chr8 27276893 T-C Hetero INTRON
SBS Chr9 1819842 G-A Homo SYNONYMOUS_CODING
SBS Chr9 12516840 A-G Homo INTERGENIC
SBS Chr9 13134400 C-T Homo INTERGENIC
SBS Chr9 18379478 G-A Hetero INTERGENIC
SBS Chr10 14727372 A-C Homo INTERGENIC
SBS Chr11 8475414 A-T Homo UTR_3_PRIME
SBS Chr11 14790842 A-T Hetero INTERGENIC
SBS Chr11 19187065 C-T Hetero INTERGENIC
SBS Chr11 20164474 G-A Hetero UTR_3_PRIME
SBS Chr11 22136985 G-T Hetero INTERGENIC
SBS Chr11 25291257 G-A Hetero INTERGENIC
SBS Chr12 2165021 T-A Hetero INTERGENIC
SBS Chr12 3988772 T-G Hetero INTERGENIC
SBS Chr12 5364448 T-A Hetero INTERGENIC
SBS Chr12 7499685 C-A Hetero INTERGENIC
SBS Chr12 8125398 G-A Hetero INTERGENIC
SBS Chr12 11998102 G-A Hetero INTERGENIC
SBS Chr12 16205081 C-T Hetero INTERGENIC
SBS Chr12 20377641 C-A Hetero INTRON

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1899604 1899607 3
Deletion Chr12 2166254 2166255 1
Deletion Chr4 5714341 5714342 1
Deletion Chr6 5878455 5878457 2
Deletion Chr1 6922754 6922777 23
Deletion Chr2 7480803 7480805 2
Deletion Chr8 7607443 7607452 9
Deletion Chr8 7610001 7679000 68999 3
Deletion Chr10 10691813 10691820 7
Deletion Chr1 14202323 14202333 10
Deletion Chr6 17792097 17792103 6
Deletion Chr6 19281537 19281538 1
Deletion Chr5 23575891 23575895 4
Deletion Chr11 24281001 24297000 15999
Deletion Chr7 28892915 28892922 7
Deletion Chr6 30636861 30636867 6
Deletion Chr2 36266760 36266764 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 20732330 20732340 9
Insertion Chr11 25036464 25036470 5

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 7714373 8007247 OsKitaake02g100900
Inversion Chr2 7714378 8007247 OsKitaake02g100900
Inversion Chr1 34430930 34697964

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 7714370 Chr1 34698155 OsKitaake02g100900
Translocation Chr2 8007243 Chr1 34698003
Translocation Chr12 20431116 Chr1 34430956

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2856150	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g036400
SBS	Chr1	24640616	G-T	Hetero	INTERGENIC
SBS	Chr1	27532602	A-C	Hetero	INTERGENIC
SBS	Chr1	27958199	T-A	Hetero	INTERGENIC
SBS	Chr1	31230029	G-A	Hetero	UTR_5_PRIME
SBS	Chr1	41415919	G-T	Hetero	INTERGENIC
SBS	Chr1	41538543	A-G	Hetero	INTERGENIC
SBS	Chr2	8098953	G-T	Hetero	INTERGENIC
SBS	Chr2	9029676	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g113050
SBS	Chr2	12545492	T-C	Hetero	INTRON
SBS	Chr2	13100521	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	15127318	G-A	Homo	INTERGENIC
SBS	Chr2	20863002	A-T	Hetero	INTERGENIC
SBS	Chr2	27136593	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	30359974	G-T	Homo	INTERGENIC
SBS	Chr3	7572250	C-A	Hetero	INTERGENIC
SBS	Chr3	10147709	A-G	Hetero	INTERGENIC
SBS	Chr3	36954045	C-T	Homo	INTERGENIC
SBS	Chr4	5201559	G-A	Hetero	INTERGENIC
SBS	Chr4	13746394	G-A	Hetero	INTERGENIC
SBS	Chr4	14716936	C-T	Hetero	INTERGENIC
SBS	Chr4	14911723	C-T	Hetero	INTERGENIC
SBS	Chr4	19478083	C-T	Hetero	INTERGENIC
SBS	Chr4	26364694	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g188200
SBS	Chr4	29376891	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	29458509	C-T	Hetero	INTERGENIC
SBS	Chr5	6657856	C-A	Hetero	INTERGENIC
SBS	Chr5	8236672	G-A	Hetero	INTERGENIC
SBS	Chr5	8236674	T-A	Hetero	INTERGENIC
SBS	Chr6	132855	G-A	Hetero	INTERGENIC
SBS	Chr6	8104479	T-A	Homo	UTR_3_PRIME
SBS	Chr6	15565096	A-G	Homo	INTERGENIC
SBS	Chr6	17749756	A-C	Homo	INTERGENIC
SBS	Chr6	18776249	C-T	Homo	INTRON
SBS	Chr7	4458676	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr7	14808121	G-T	Hetero	INTERGENIC
SBS	Chr7	14889150	G-A	Hetero	INTERGENIC
SBS	Chr7	20522099	T-G	Hetero	INTERGENIC
SBS	Chr8	20011147	C-A	Hetero	INTERGENIC
SBS	Chr8	23159891	A-T	Hetero	INTERGENIC
SBS	Chr8	27276893	T-C	Hetero	INTRON
SBS	Chr9	1819842	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	12516840	A-G	Homo	INTERGENIC
SBS	Chr9	13134400	C-T	Homo	INTERGENIC
SBS	Chr9	18379478	G-A	Hetero	INTERGENIC
SBS	Chr10	14727372	A-C	Homo	INTERGENIC
SBS	Chr11	8475414	A-T	Homo	UTR_3_PRIME
SBS	Chr11	14790842	A-T	Hetero	INTERGENIC
SBS	Chr11	19187065	C-T	Hetero	INTERGENIC
SBS	Chr11	20164474	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	22136985	G-T	Hetero	INTERGENIC
SBS	Chr11	25291257	G-A	Hetero	INTERGENIC
SBS	Chr12	2165021	T-A	Hetero	INTERGENIC
SBS	Chr12	3988772	T-G	Hetero	INTERGENIC
SBS	Chr12	5364448	T-A	Hetero	INTERGENIC
SBS	Chr12	7499685	C-A	Hetero	INTERGENIC
SBS	Chr12	8125398	G-A	Hetero	INTERGENIC
SBS	Chr12	11998102	G-A	Hetero	INTERGENIC
SBS	Chr12	16205081	C-T	Hetero	INTERGENIC
SBS	Chr12	20377641	C-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1899604	1899607	3
Deletion	Chr12	2166254	2166255	1
Deletion	Chr4	5714341	5714342	1
Deletion	Chr6	5878455	5878457	2
Deletion	Chr1	6922754	6922777	23
Deletion	Chr2	7480803	7480805	2
Deletion	Chr8	7607443	7607452	9
Deletion	Chr8	7610001	7679000	68999	3
Deletion	Chr10	10691813	10691820	7
Deletion	Chr1	14202323	14202333	10
Deletion	Chr6	17792097	17792103	6
Deletion	Chr6	19281537	19281538	1
Deletion	Chr5	23575891	23575895	4
Deletion	Chr11	24281001	24297000	15999
Deletion	Chr7	28892915	28892922	7
Deletion	Chr6	30636861	30636867	6
Deletion	Chr2	36266760	36266764	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	7714373	8007247	OsKitaake02g100900
Inversion	Chr2	7714378	8007247	OsKitaake02g100900
Inversion	Chr1	34430930	34697964

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes