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Mutant Information

Mutant Name	FN3627-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3627-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10699348 C-T Hetero INTERGENIC
SBS Chr1 28823371 G-T Hetero INTRON
SBS Chr1 28926420 G-A Homo INTERGENIC
SBS Chr1 42338937 A-G Homo INTERGENIC
SBS Chr2 15567731 T-C Hetero INTERGENIC
SBS Chr2 16347643 A-C Hetero SYNONYMOUS_CODING
SBS Chr2 24906696 C-A Hetero INTERGENIC
SBS Chr2 31126006 G-T Homo INTRON
SBS Chr2 35682465 A-G Hetero INTERGENIC
SBS Chr3 10028974 A-G Hetero INTERGENIC
SBS Chr3 16937596 A-G Homo INTERGENIC
SBS Chr3 19267328 A-C Hetero INTERGENIC
SBS Chr3 19513605 T-C Hetero INTERGENIC
SBS Chr3 28147618 T-A Homo INTERGENIC
SBS Chr4 19640396 C-T Hetero INTERGENIC
SBS Chr4 21518388 G-C Hetero INTERGENIC
SBS Chr4 25393498 C-T Hetero INTERGENIC
SBS Chr4 35951786 T-A Hetero INTERGENIC
SBS Chr5 11241681 C-A Hetero INTERGENIC
SBS Chr5 24425647 A-G Hetero INTRON
SBS Chr5 29827417 C-T Homo INTERGENIC
SBS Chr5 29827421 A-T Homo INTERGENIC
SBS Chr6 10813320 G-C Hetero INTERGENIC
SBS Chr6 12070089 G-A Homo INTERGENIC
SBS Chr6 12070090 C-A Homo INTERGENIC
SBS Chr6 13291653 G-T Hetero INTERGENIC
SBS Chr6 15849468 G-A Homo INTERGENIC
SBS Chr6 29502183 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g273600
SBS Chr7 6772903 C-T Homo INTERGENIC
SBS Chr7 10404372 G-A Homo INTERGENIC
SBS Chr7 17543024 G-A Homo INTERGENIC
SBS Chr7 28548041 C-A Hetero INTERGENIC
SBS Chr8 8715036 G-C Hetero INTERGENIC
SBS Chr8 13982431 A-G Homo INTRON
SBS Chr8 13982433 A-G Homo INTRON
SBS Chr8 13982436 G-T Homo INTRON
SBS Chr8 16374380 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g125600
SBS Chr8 16374395 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g125600
SBS Chr8 16387232 A-T Hetero INTERGENIC
SBS Chr8 16387233 G-T Hetero INTERGENIC
SBS Chr8 18952025 C-T Hetero INTRON
SBS Chr9 6988628 A-G Hetero INTERGENIC
SBS Chr9 12813827 A-T Hetero INTERGENIC
SBS Chr9 12919560 G-T Homo INTERGENIC
SBS Chr9 15414839 A-T Hetero INTERGENIC
SBS Chr10 6444391 C-T Hetero INTERGENIC
SBS Chr10 23710271 C-T Hetero INTERGENIC
SBS Chr11 2022097 T-G Hetero INTERGENIC
SBS Chr11 8676811 G-A Hetero INTERGENIC
SBS Chr11 11205662 A-G Hetero INTERGENIC
SBS Chr11 12857605 G-A Hetero INTERGENIC
SBS Chr11 17344317 G-A Homo INTERGENIC
SBS Chr12 26826734 C-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1852732 1852747 15
Deletion Chr11 1894740 1894747 7
Deletion Chr8 3123682 3123684 2
Deletion Chr2 4956951 4956953 2
Deletion Chr1 7151154 7151156 2
Deletion Chr1 8097566 8097568 2
Deletion Chr5 13005561 13005568 7
Deletion Chr11 14508001 14546000 37999 4
Deletion Chr3 17022309 17022315 6
Deletion Chr5 23268526 23268532 6
Deletion Chr4 25967448 25967451 3
Deletion Chr1 29907841 29907842 1
Deletion Chr3 36942501 36942514 13
Deletion Chr1 42369500 42369507 7
Deletion Chr1 42373417 42373422 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27872045 27872048 2
Insertion Chr1 36723632 36723635 2
Insertion Chr9 19394729 19394732 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10699348	C-T	Hetero	INTERGENIC
SBS	Chr1	28823371	G-T	Hetero	INTRON
SBS	Chr1	28926420	G-A	Homo	INTERGENIC
SBS	Chr1	42338937	A-G	Homo	INTERGENIC
SBS	Chr2	15567731	T-C	Hetero	INTERGENIC
SBS	Chr2	16347643	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	24906696	C-A	Hetero	INTERGENIC
SBS	Chr2	31126006	G-T	Homo	INTRON
SBS	Chr2	35682465	A-G	Hetero	INTERGENIC
SBS	Chr3	10028974	A-G	Hetero	INTERGENIC
SBS	Chr3	16937596	A-G	Homo	INTERGENIC
SBS	Chr3	19267328	A-C	Hetero	INTERGENIC
SBS	Chr3	19513605	T-C	Hetero	INTERGENIC
SBS	Chr3	28147618	T-A	Homo	INTERGENIC
SBS	Chr4	19640396	C-T	Hetero	INTERGENIC
SBS	Chr4	21518388	G-C	Hetero	INTERGENIC
SBS	Chr4	25393498	C-T	Hetero	INTERGENIC
SBS	Chr4	35951786	T-A	Hetero	INTERGENIC
SBS	Chr5	11241681	C-A	Hetero	INTERGENIC
SBS	Chr5	24425647	A-G	Hetero	INTRON
SBS	Chr5	29827417	C-T	Homo	INTERGENIC
SBS	Chr5	29827421	A-T	Homo	INTERGENIC
SBS	Chr6	10813320	G-C	Hetero	INTERGENIC
SBS	Chr6	12070089	G-A	Homo	INTERGENIC
SBS	Chr6	12070090	C-A	Homo	INTERGENIC
SBS	Chr6	13291653	G-T	Hetero	INTERGENIC
SBS	Chr6	15849468	G-A	Homo	INTERGENIC
SBS	Chr6	29502183	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g273600
SBS	Chr7	6772903	C-T	Homo	INTERGENIC
SBS	Chr7	10404372	G-A	Homo	INTERGENIC
SBS	Chr7	17543024	G-A	Homo	INTERGENIC
SBS	Chr7	28548041	C-A	Hetero	INTERGENIC
SBS	Chr8	8715036	G-C	Hetero	INTERGENIC
SBS	Chr8	13982431	A-G	Homo	INTRON
SBS	Chr8	13982433	A-G	Homo	INTRON
SBS	Chr8	13982436	G-T	Homo	INTRON
SBS	Chr8	16374380	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g125600
SBS	Chr8	16374395	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g125600
SBS	Chr8	16387232	A-T	Hetero	INTERGENIC
SBS	Chr8	16387233	G-T	Hetero	INTERGENIC
SBS	Chr8	18952025	C-T	Hetero	INTRON
SBS	Chr9	6988628	A-G	Hetero	INTERGENIC
SBS	Chr9	12813827	A-T	Hetero	INTERGENIC
SBS	Chr9	12919560	G-T	Homo	INTERGENIC
SBS	Chr9	15414839	A-T	Hetero	INTERGENIC
SBS	Chr10	6444391	C-T	Hetero	INTERGENIC
SBS	Chr10	23710271	C-T	Hetero	INTERGENIC
SBS	Chr11	2022097	T-G	Hetero	INTERGENIC
SBS	Chr11	8676811	G-A	Hetero	INTERGENIC
SBS	Chr11	11205662	A-G	Hetero	INTERGENIC
SBS	Chr11	12857605	G-A	Hetero	INTERGENIC
SBS	Chr11	17344317	G-A	Homo	INTERGENIC
SBS	Chr12	26826734	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1852732	1852747	15
Deletion	Chr11	1894740	1894747	7
Deletion	Chr8	3123682	3123684	2
Deletion	Chr2	4956951	4956953	2
Deletion	Chr1	7151154	7151156	2
Deletion	Chr1	8097566	8097568	2
Deletion	Chr5	13005561	13005568	7
Deletion	Chr11	14508001	14546000	37999	4
Deletion	Chr3	17022309	17022315	6
Deletion	Chr5	23268526	23268532	6
Deletion	Chr4	25967448	25967451	3
Deletion	Chr1	29907841	29907842	1
Deletion	Chr3	36942501	36942514	13
Deletion	Chr1	42369500	42369507	7
Deletion	Chr1	42373417	42373422	5

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes