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| Mutant Information |
|---|
| Mutant Name | FN3628-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3628-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4303076 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 23355017 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 39037077 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 17546757 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 18862027 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 32458998 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 5996644 | A-G | Homo | SPLICE_SITE_REGION | |
| SBS | Chr3 | 6576378 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g093800 |
| SBS | Chr3 | 17324515 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 584780 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 7257904 | C-T | Homo | INTRON | |
| SBS | Chr5 | 23553983 | C-A | Hetero | INTRON | |
| SBS | Chr5 | 23912748 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g210600 |
| SBS | Chr5 | 30026652 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 1267363 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 22071557 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 3364028 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 8155169 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 9114238 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 12229654 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 16253957 | T-C | Hetero | INTRON | |
| SBS | Chr8 | 1298063 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 11890977 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 1516327 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 3492265 | G-A | Hetero | STOP_GAINED | OsKitaake09g017900 |
| SBS | Chr9 | 4102350 | A-G | Hetero | INTRON | |
| SBS | Chr9 | 22041907 | C-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr10 | 23047383 | G-C | Hetero | START_GAINED | |
| SBS | Chr11 | 3855451 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 6667564 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8966386 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 17375685 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 19104118 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 23051525 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 26852575 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1753174 | A-G | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 712722 | 712726 | 4 | |
| Deletion | Chr10 | 3210733 | 3210740 | 7 | |
| Deletion | Chr7 | 3692078 | 3692086 | 8 | |
| Deletion | Chr7 | 7330340 | 7330344 | 4 | |
| Deletion | Chr9 | 10520499 | 10520506 | 7 | |
| Deletion | Chr1 | 10678211 | 10678214 | 3 | |
| Deletion | Chr2 | 13684226 | 13684228 | 2 | |
| Deletion | Chr9 | 13742835 | 13742849 | 14 | |
| Deletion | Chr7 | 13982189 | 13982198 | 9 | |
| Deletion | Chr6 | 18308211 | 18308218 | 7 | |
| Deletion | Chr6 | 18613419 | 18613422 | 3 | |
| Deletion | Chr12 | 23912095 | 23912096 | 1 | |
| Deletion | Chr4 | 36596371 | 36596374 | 3 | OsKitaake04g318600 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 25903566 | 25903569 | 2 | |
| Insertion | Chr4 | 24632003 | 24632007 | 3 | |
| Insertion | Chr8 | 26906267 | 26906270 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 23173529 | 23621197 | OsKitaake10g195500 |
| Inversion | Chr10 | 23173536 | 23621305 | OsKitaake10g195500 |