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Mutant Information

Mutant Name	FN3629-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3629-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14869222 A-C Hetero INTERGENIC
SBS Chr1 15548093 C-T Hetero INTERGENIC
SBS Chr1 31238838 G-A Hetero INTERGENIC
SBS Chr1 33398751 C-G Hetero INTERGENIC
SBS Chr1 35167502 C-G Hetero INTRON
SBS Chr2 1186016 A-G Hetero INTRON
SBS Chr2 14861022 A-G Hetero INTERGENIC
SBS Chr2 18229397 G-A Hetero INTERGENIC
SBS Chr2 24702660 A-G Hetero INTERGENIC
SBS Chr2 33650896 C-T Homo UTR_3_PRIME
SBS Chr3 2827166 G-A Hetero INTERGENIC
SBS Chr3 25665123 C-A Homo INTERGENIC
SBS Chr4 1553343 A-C Hetero INTERGENIC
SBS Chr4 2264974 G-A Hetero INTERGENIC
SBS Chr4 4830217 G-A Hetero INTERGENIC
SBS Chr4 5619973 A-C Hetero INTERGENIC
SBS Chr5 4799583 C-G Homo INTERGENIC
SBS Chr5 13751825 G-A Homo INTERGENIC
SBS Chr5 16719740 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g128100
SBS Chr6 6135585 C-A Hetero INTERGENIC
SBS Chr6 8179277 A-C Homo INTERGENIC
SBS Chr6 12143047 T-G Hetero INTERGENIC
SBS Chr6 28459729 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g260800
SBS Chr6 29336133 G-T Hetero STOP_GAINED OsKitaake06g271700
SBS Chr7 4867837 G-T Hetero INTERGENIC
SBS Chr7 24741224 G-A Hetero INTERGENIC
SBS Chr7 27949839 T-C Hetero INTERGENIC
SBS Chr8 5713441 T-C Hetero INTERGENIC
SBS Chr9 1409541 C-T Hetero INTERGENIC
SBS Chr9 7282955 C-T Hetero INTERGENIC
SBS Chr9 9614077 G-A Hetero INTERGENIC
SBS Chr9 10384347 C-T Hetero INTERGENIC
SBS Chr9 19793104 A-G Hetero INTERGENIC
SBS Chr11 5334758 C-A Homo INTERGENIC
SBS Chr11 18292402 C-T Homo INTERGENIC
SBS Chr11 25502750 A-T Hetero INTERGENIC
SBS Chr11 26188448 A-G Hetero INTERGENIC
SBS Chr12 13138538 C-T Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 11062014 11062019 5
Deletion Chr5 11956361 11956362 1
Deletion Chr7 12945698 12945702 4
Deletion Chr9 17000402 17000404 2
Deletion Chr11 17229001 17260000 30999 OsKitaake11g134400
Deletion Chr6 17984843 17984848 5
Deletion Chr5 19923800 19923805 5
Deletion Chr11 21536001 21569000 32999 2
Deletion Chr3 21641001 21641005 4
Deletion Chr11 21790794 21790796 2
Deletion Chr5 23441138 23441140 2 OsKitaake05g196400
Deletion Chr2 24977979 24977983 4
Deletion Chr5 25808814 25808820 6 OsKitaake05g227000

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 288004 384175 OsKitaake09g002700
Inversion Chr9 288518 384183 OsKitaake09g002700
Inversion Chr1 7099231 7859062 OsKitaake01g088800
Inversion Chr1 7099233 7859063 OsKitaake01g088800
Inversion Chr6 14351147 14387543 OsKitaake06g147800
Inversion Chr6 14351366 14387546 OsKitaake06g147800
Inversion Chr4 22684266 23276711 2
Inversion Chr4 22848920 23276708 2

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 901171 Chr6 14351150 OsKitaake06g147800
Translocation Chr9 901178 Chr7 26738128
Translocation Chr9 903792 Chr7 26738127
Translocation Chr9 903803 Chr6 14351358 OsKitaake06g147800
Translocation Chr9 7159902 Chr6 25250500
Translocation Chr11 17258960 Chr2 25392317
Translocation Chr11 17259737 Chr2 25392322

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14869222	A-C	Hetero	INTERGENIC
SBS	Chr1	15548093	C-T	Hetero	INTERGENIC
SBS	Chr1	31238838	G-A	Hetero	INTERGENIC
SBS	Chr1	33398751	C-G	Hetero	INTERGENIC
SBS	Chr1	35167502	C-G	Hetero	INTRON
SBS	Chr2	1186016	A-G	Hetero	INTRON
SBS	Chr2	14861022	A-G	Hetero	INTERGENIC
SBS	Chr2	18229397	G-A	Hetero	INTERGENIC
SBS	Chr2	24702660	A-G	Hetero	INTERGENIC
SBS	Chr2	33650896	C-T	Homo	UTR_3_PRIME
SBS	Chr3	2827166	G-A	Hetero	INTERGENIC
SBS	Chr3	25665123	C-A	Homo	INTERGENIC
SBS	Chr4	1553343	A-C	Hetero	INTERGENIC
SBS	Chr4	2264974	G-A	Hetero	INTERGENIC
SBS	Chr4	4830217	G-A	Hetero	INTERGENIC
SBS	Chr4	5619973	A-C	Hetero	INTERGENIC
SBS	Chr5	4799583	C-G	Homo	INTERGENIC
SBS	Chr5	13751825	G-A	Homo	INTERGENIC
SBS	Chr5	16719740	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g128100
SBS	Chr6	6135585	C-A	Hetero	INTERGENIC
SBS	Chr6	8179277	A-C	Homo	INTERGENIC
SBS	Chr6	12143047	T-G	Hetero	INTERGENIC
SBS	Chr6	28459729	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g260800
SBS	Chr6	29336133	G-T	Hetero	STOP_GAINED	OsKitaake06g271700
SBS	Chr7	4867837	G-T	Hetero	INTERGENIC
SBS	Chr7	24741224	G-A	Hetero	INTERGENIC
SBS	Chr7	27949839	T-C	Hetero	INTERGENIC
SBS	Chr8	5713441	T-C	Hetero	INTERGENIC
SBS	Chr9	1409541	C-T	Hetero	INTERGENIC
SBS	Chr9	7282955	C-T	Hetero	INTERGENIC
SBS	Chr9	9614077	G-A	Hetero	INTERGENIC
SBS	Chr9	10384347	C-T	Hetero	INTERGENIC
SBS	Chr9	19793104	A-G	Hetero	INTERGENIC
SBS	Chr11	5334758	C-A	Homo	INTERGENIC
SBS	Chr11	18292402	C-T	Homo	INTERGENIC
SBS	Chr11	25502750	A-T	Hetero	INTERGENIC
SBS	Chr11	26188448	A-G	Hetero	INTERGENIC
SBS	Chr12	13138538	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	11062014	11062019	5
Deletion	Chr5	11956361	11956362	1
Deletion	Chr7	12945698	12945702	4
Deletion	Chr9	17000402	17000404	2
Deletion	Chr11	17229001	17260000	30999	OsKitaake11g134400
Deletion	Chr6	17984843	17984848	5
Deletion	Chr5	19923800	19923805	5
Deletion	Chr11	21536001	21569000	32999	2
Deletion	Chr3	21641001	21641005	4
Deletion	Chr11	21790794	21790796	2
Deletion	Chr5	23441138	23441140	2	OsKitaake05g196400
Deletion	Chr2	24977979	24977983	4
Deletion	Chr5	25808814	25808820	6	OsKitaake05g227000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	288004	384175	OsKitaake09g002700
Inversion	Chr9	288518	384183	OsKitaake09g002700
Inversion	Chr1	7099231	7859062	OsKitaake01g088800
Inversion	Chr1	7099233	7859063	OsKitaake01g088800
Inversion	Chr6	14351147	14387543	OsKitaake06g147800
Inversion	Chr6	14351366	14387546	OsKitaake06g147800
Inversion	Chr4	22684266	23276711	2
Inversion	Chr4	22848920	23276708	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes