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Mutant Information

Mutant Name	FN3630-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3630-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 60

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8699681 C-T Hetero INTRON
SBS Chr1 9127667 C-T Homo INTERGENIC
SBS Chr1 26404491 T-A Hetero INTERGENIC
SBS Chr1 32166728 A-C Hetero INTRON
SBS Chr1 33922263 C-T Homo UTR_3_PRIME
SBS Chr2 82031 T-A Hetero INTERGENIC
SBS Chr2 703119 T-A Hetero INTRON
SBS Chr2 3555047 A-T Hetero INTERGENIC
SBS Chr2 10173537 T-C Hetero INTRON
SBS Chr2 13686810 C-G Hetero INTERGENIC
SBS Chr2 14527654 T-C Homo INTERGENIC
SBS Chr2 15225913 C-T Hetero INTERGENIC
SBS Chr2 16619194 G-A Hetero INTERGENIC
SBS Chr3 11836879 G-T Hetero INTERGENIC
SBS Chr3 13143875 G-A Hetero INTERGENIC
SBS Chr3 15913637 A-G Hetero INTERGENIC
SBS Chr3 19314239 A-T Hetero INTERGENIC
SBS Chr3 22200335 G-A Hetero INTERGENIC
SBS Chr3 30490104 C-T Hetero INTRON
SBS Chr3 30635918 T-C Hetero INTERGENIC
SBS Chr4 13568522 A-G Hetero INTERGENIC
SBS Chr4 16900953 T-A Homo INTERGENIC
SBS Chr4 18454457 A-G Hetero INTERGENIC
SBS Chr4 25702450 C-A Hetero INTERGENIC
SBS Chr4 32285672 C-T Homo INTERGENIC
SBS Chr4 34224356 C-T Hetero INTERGENIC
SBS Chr5 3955366 C-T Hetero INTERGENIC
SBS Chr5 7046990 C-T Hetero INTERGENIC
SBS Chr5 11686874 C-T Hetero INTERGENIC
SBS Chr5 12208642 A-T Hetero INTERGENIC
SBS Chr5 18880749 A-T Hetero INTERGENIC
SBS Chr5 19749833 T-C Homo INTERGENIC
SBS Chr5 19862865 G-T Homo INTERGENIC
SBS Chr5 24290562 G-A Homo INTERGENIC
SBS Chr5 28468514 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 5160660 G-A Hetero INTERGENIC
SBS Chr6 7168446 T-A Hetero INTERGENIC
SBS Chr6 8686057 G-A Hetero INTERGENIC
SBS Chr6 16345034 G-T Hetero INTERGENIC
SBS Chr6 24948424 A-T Hetero INTERGENIC
SBS Chr7 230319 C-G Hetero INTERGENIC
SBS Chr7 10410060 G-A Homo INTERGENIC
SBS Chr7 17126392 T-A Hetero INTERGENIC
SBS Chr8 909502 C-T Hetero INTERGENIC
SBS Chr8 4458948 A-C Hetero SYNONYMOUS_CODING
SBS Chr8 13335052 G-T Hetero INTERGENIC
SBS Chr8 17316981 T-A Homo INTERGENIC
SBS Chr8 18531942 G-A Homo INTERGENIC
SBS Chr9 2513056 C-T Hetero INTERGENIC
SBS Chr9 9527003 G-A Hetero INTERGENIC
SBS Chr9 16315770 A-G Homo INTERGENIC
SBS Chr10 270216 C-A Homo STOP_GAINED OsKitaake10g001800
SBS Chr10 8633856 C-G Hetero INTRON
SBS Chr11 8227038 A-T Homo INTERGENIC
SBS Chr11 13404963 G-A Homo INTRON
SBS Chr11 24368783 C-A Hetero INTERGENIC
SBS Chr11 25329899 A-T Homo INTERGENIC
SBS Chr11 28506764 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g233300
SBS Chr11 28506765 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 17876045 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1636358 1636362 4 OsKitaake02g025766
Deletion Chr7 5295296 5295297 1
Deletion Chr6 8001128 8001129 1 OsKitaake06g101900
Deletion Chr3 8675581 8675586 5
Deletion Chr2 9508472 9508474 2
Deletion Chr12 10814527 10814530 3
Deletion Chr10 13264002 13264003 1
Deletion Chr5 19214220 19214222 2 OsKitaake05g150500
Deletion Chr7 19898964 19898966 2
Deletion Chr4 20530403 20530406 3
Deletion Chr8 20771931 20771932 1
Deletion Chr1 20807402 20807403 1
Deletion Chr2 22654656 22654660 4 OsKitaake02g220000
Deletion Chr8 26477052 26477053 1
Deletion Chr8 28929200 28929201 1
Deletion Chr1 36072306 36072311 5 OsKitaake01g382500

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 25646301 25646303 1
Insertion Chr8 8874162 8874165 2
Insertion Chr3 22175582 22175605 22 OsKitaake03g241635
Insertion Chr11 12508912 12508914 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 28960613 Chr1 30478260

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8699681	C-T	Hetero	INTRON
SBS	Chr1	9127667	C-T	Homo	INTERGENIC
SBS	Chr1	26404491	T-A	Hetero	INTERGENIC
SBS	Chr1	32166728	A-C	Hetero	INTRON
SBS	Chr1	33922263	C-T	Homo	UTR_3_PRIME
SBS	Chr2	82031	T-A	Hetero	INTERGENIC
SBS	Chr2	703119	T-A	Hetero	INTRON
SBS	Chr2	3555047	A-T	Hetero	INTERGENIC
SBS	Chr2	10173537	T-C	Hetero	INTRON
SBS	Chr2	13686810	C-G	Hetero	INTERGENIC
SBS	Chr2	14527654	T-C	Homo	INTERGENIC
SBS	Chr2	15225913	C-T	Hetero	INTERGENIC
SBS	Chr2	16619194	G-A	Hetero	INTERGENIC
SBS	Chr3	11836879	G-T	Hetero	INTERGENIC
SBS	Chr3	13143875	G-A	Hetero	INTERGENIC
SBS	Chr3	15913637	A-G	Hetero	INTERGENIC
SBS	Chr3	19314239	A-T	Hetero	INTERGENIC
SBS	Chr3	22200335	G-A	Hetero	INTERGENIC
SBS	Chr3	30490104	C-T	Hetero	INTRON
SBS	Chr3	30635918	T-C	Hetero	INTERGENIC
SBS	Chr4	13568522	A-G	Hetero	INTERGENIC
SBS	Chr4	16900953	T-A	Homo	INTERGENIC
SBS	Chr4	18454457	A-G	Hetero	INTERGENIC
SBS	Chr4	25702450	C-A	Hetero	INTERGENIC
SBS	Chr4	32285672	C-T	Homo	INTERGENIC
SBS	Chr4	34224356	C-T	Hetero	INTERGENIC
SBS	Chr5	3955366	C-T	Hetero	INTERGENIC
SBS	Chr5	7046990	C-T	Hetero	INTERGENIC
SBS	Chr5	11686874	C-T	Hetero	INTERGENIC
SBS	Chr5	12208642	A-T	Hetero	INTERGENIC
SBS	Chr5	18880749	A-T	Hetero	INTERGENIC
SBS	Chr5	19749833	T-C	Homo	INTERGENIC
SBS	Chr5	19862865	G-T	Homo	INTERGENIC
SBS	Chr5	24290562	G-A	Homo	INTERGENIC
SBS	Chr5	28468514	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	5160660	G-A	Hetero	INTERGENIC
SBS	Chr6	7168446	T-A	Hetero	INTERGENIC
SBS	Chr6	8686057	G-A	Hetero	INTERGENIC
SBS	Chr6	16345034	G-T	Hetero	INTERGENIC
SBS	Chr6	24948424	A-T	Hetero	INTERGENIC
SBS	Chr7	230319	C-G	Hetero	INTERGENIC
SBS	Chr7	10410060	G-A	Homo	INTERGENIC
SBS	Chr7	17126392	T-A	Hetero	INTERGENIC
SBS	Chr8	909502	C-T	Hetero	INTERGENIC
SBS	Chr8	4458948	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr8	13335052	G-T	Hetero	INTERGENIC
SBS	Chr8	17316981	T-A	Homo	INTERGENIC
SBS	Chr8	18531942	G-A	Homo	INTERGENIC
SBS	Chr9	2513056	C-T	Hetero	INTERGENIC
SBS	Chr9	9527003	G-A	Hetero	INTERGENIC
SBS	Chr9	16315770	A-G	Homo	INTERGENIC
SBS	Chr10	270216	C-A	Homo	STOP_GAINED	OsKitaake10g001800
SBS	Chr10	8633856	C-G	Hetero	INTRON
SBS	Chr11	8227038	A-T	Homo	INTERGENIC
SBS	Chr11	13404963	G-A	Homo	INTRON
SBS	Chr11	24368783	C-A	Hetero	INTERGENIC
SBS	Chr11	25329899	A-T	Homo	INTERGENIC
SBS	Chr11	28506764	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g233300
SBS	Chr11	28506765	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	17876045	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1636358	1636362	4	OsKitaake02g025766
Deletion	Chr7	5295296	5295297	1
Deletion	Chr6	8001128	8001129	1	OsKitaake06g101900
Deletion	Chr3	8675581	8675586	5
Deletion	Chr2	9508472	9508474	2
Deletion	Chr12	10814527	10814530	3
Deletion	Chr10	13264002	13264003	1
Deletion	Chr5	19214220	19214222	2	OsKitaake05g150500
Deletion	Chr7	19898964	19898966	2
Deletion	Chr4	20530403	20530406	3
Deletion	Chr8	20771931	20771932	1
Deletion	Chr1	20807402	20807403	1
Deletion	Chr2	22654656	22654660	4	OsKitaake02g220000
Deletion	Chr8	26477052	26477053	1
Deletion	Chr8	28929200	28929201	1
Deletion	Chr1	36072306	36072311	5	OsKitaake01g382500

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	28960613	Chr1	30478260

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes