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| Mutant Information |
|---|
| Mutant Name | FN3631-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3631-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19459119 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 38126233 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 43035555 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g474700 |
| SBS | Chr2 | 5721269 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g079300 |
| SBS | Chr2 | 31970914 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 1064492 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 11493139 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15605171 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g200500 |
| SBS | Chr3 | 27390835 | G-A | Homo | INTRON | |
| SBS | Chr5 | 14964437 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 5596550 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 16705741 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 6790055 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 22274712 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 23320815 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23320816 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 27172189 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 28660831 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20872363 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 877509 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6162753 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 20790144 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24109145 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 5306306 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 5470441 | A-G | Hetero | INTRON | |
| SBS | Chr12 | 11265349 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24737776 | G-A | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 1172001 | 1207000 | 34999 | OsKitaake12g017200 |
| Deletion | Chr6 | 1419001 | 1419006 | 5 | |
| Deletion | Chr4 | 3083649 | 3083652 | 3 | |
| Deletion | Chr4 | 7409001 | 8161000 | 751999 | 45 |
| Deletion | Chr7 | 28238109 | 28238111 | 2 | |
| Deletion | Chr2 | 31553373 | 31553378 | 5 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 8104244 | 8104247 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 773729 | 1172113 | OsKitaake12g010800 |
| Inversion | Chr12 | 774002 | 1206964 | OsKitaake12g010800 |
| Inversion | Chr12 | 14509496 | 14562849 | OsKitaake12g116300 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 1511022 | Chr4 | 9767827 | |
| Translocation | Chr6 | 1518383 | Chr3 | 25405560 | OsKitaake06g017700 |
| Translocation | Chr4 | 9768494 | Chr3 | 25421132 | OsKitaake03g268300 |