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Mutant Information

Mutant Name	FN3632-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3632-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4473642 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g059500
SBS Chr1 11269910 C-T Hetero INTERGENIC
SBS Chr1 17738041 T-A Hetero INTERGENIC
SBS Chr1 29789871 G-A Hetero INTERGENIC
SBS Chr2 13233828 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 17314461 G-A Hetero INTERGENIC
SBS Chr2 17340511 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g174100
SBS Chr2 21790635 A-G Hetero INTERGENIC
SBS Chr2 25321182 G-A Homo INTERGENIC
SBS Chr2 27336714 G-A Homo INTERGENIC
SBS Chr3 7024862 T-C Hetero INTERGENIC
SBS Chr3 7122378 C-T Hetero INTERGENIC
SBS Chr3 9419405 A-T Hetero INTERGENIC
SBS Chr3 13182675 T-C Hetero INTERGENIC
SBS Chr3 15644727 C-T Hetero INTERGENIC
SBS Chr3 22608384 G-T Hetero INTERGENIC
SBS Chr3 30399307 T-A Hetero INTRON
SBS Chr4 1335788 G-A Hetero UTR_5_PRIME
SBS Chr4 10034435 T-C Hetero INTERGENIC
SBS Chr4 19488955 T-C Hetero INTERGENIC
SBS Chr4 24508794 A-T Homo INTERGENIC
SBS Chr4 26927128 C-T Homo INTERGENIC
SBS Chr5 12003209 C-T Hetero INTERGENIC
SBS Chr6 5369337 A-T Homo NON_SYNONYMOUS_CODING OsKitaake06g072200
SBS Chr6 5369338 A-T Homo NON_SYNONYMOUS_CODING OsKitaake06g072200
SBS Chr6 24077849 G-A Homo INTERGENIC
SBS Chr7 4940873 C-A Homo NON_SYNONYMOUS_CODING OsKitaake07g060500
SBS Chr7 14488327 T-A Hetero INTERGENIC
SBS Chr7 16235377 G-C Homo INTERGENIC
SBS Chr7 16582761 T-C Hetero INTERGENIC
SBS Chr7 16740056 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 16740074 C-A Hetero SYNONYMOUS_CODING
SBS Chr7 18031689 C-T Hetero INTERGENIC
SBS Chr7 20625775 C-G Hetero INTRON
SBS Chr8 3711722 A-C Homo INTERGENIC
SBS Chr8 11896513 G-T Hetero INTERGENIC
SBS Chr8 17769803 T-C Hetero INTERGENIC
SBS Chr8 18875049 A-G Hetero INTRON
SBS Chr8 21915083 A-T Hetero INTRON
SBS Chr8 26307796 A-G Hetero INTRON
SBS Chr9 1647674 T-A Hetero INTERGENIC
SBS Chr9 6305658 C-A Homo INTERGENIC
SBS Chr9 8121568 A-G Hetero INTERGENIC
SBS Chr9 19479986 T-G Homo INTERGENIC
SBS Chr10 12267416 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g073200
SBS Chr10 17915317 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g125200
SBS Chr11 2256174 G-A Homo INTERGENIC
SBS Chr11 2256175 C-A Homo INTERGENIC
SBS Chr12 2304667 A-G Hetero INTERGENIC
SBS Chr12 25983297 T-G Homo NON_SYNONYMOUS_CODING OsKitaake12g214900

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 467779 467780 1
Deletion Chr4 3085032 3085039 7
Deletion Chr3 3403866 3403867 1
Deletion Chr2 4065720 4065724 4
Deletion Chr12 4484260 4484264 4
Deletion Chr7 4861874 4861889 15
Deletion Chr1 5199537 5199538 1
Deletion Chr2 5278421 5278422 1
Deletion Chr12 5498082 5498087 5
Deletion Chr11 6244827 6244838 11 OsKitaake11g074900
Deletion Chr3 8754705 8754719 14
Deletion Chr7 9916258 9916262 4
Deletion Chr4 15938395 15938396 1
Deletion Chr1 18320396 18320411 15
Deletion Chr12 19908395 19908399 4
Deletion Chr5 20547868 20547876 8
Deletion Chr1 20688096 20688097 1
Deletion Chr8 23950880 23950881 1
Deletion Chr2 25409140 25409141 1
Deletion Chr6 26062609 26062616 7
Deletion Chr8 26812257 26812260 3
Deletion Chr8 29278682 29278703 21 OsKitaake08g255300
Deletion Chr2 31074101 31074102 1
Deletion Chr2 35012411 35012417 6
Deletion Chr3 35835001 35862000 26999 4

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37466102 37466105 2
Insertion Chr3 18785725 18785728 2
Insertion Chr8 21461617 21461620 2
Insertion Chr10 23256523 23256526 2
Insertion Chr11 24662839 24662841 1
Insertion Chr3 23427951 23427954 2
Insertion Chr8 8960664 8960673 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4473642	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g059500
SBS	Chr1	11269910	C-T	Hetero	INTERGENIC
SBS	Chr1	17738041	T-A	Hetero	INTERGENIC
SBS	Chr1	29789871	G-A	Hetero	INTERGENIC
SBS	Chr2	13233828	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	17314461	G-A	Hetero	INTERGENIC
SBS	Chr2	17340511	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g174100
SBS	Chr2	21790635	A-G	Hetero	INTERGENIC
SBS	Chr2	25321182	G-A	Homo	INTERGENIC
SBS	Chr2	27336714	G-A	Homo	INTERGENIC
SBS	Chr3	7024862	T-C	Hetero	INTERGENIC
SBS	Chr3	7122378	C-T	Hetero	INTERGENIC
SBS	Chr3	9419405	A-T	Hetero	INTERGENIC
SBS	Chr3	13182675	T-C	Hetero	INTERGENIC
SBS	Chr3	15644727	C-T	Hetero	INTERGENIC
SBS	Chr3	22608384	G-T	Hetero	INTERGENIC
SBS	Chr3	30399307	T-A	Hetero	INTRON
SBS	Chr4	1335788	G-A	Hetero	UTR_5_PRIME
SBS	Chr4	10034435	T-C	Hetero	INTERGENIC
SBS	Chr4	19488955	T-C	Hetero	INTERGENIC
SBS	Chr4	24508794	A-T	Homo	INTERGENIC
SBS	Chr4	26927128	C-T	Homo	INTERGENIC
SBS	Chr5	12003209	C-T	Hetero	INTERGENIC
SBS	Chr6	5369337	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g072200
SBS	Chr6	5369338	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g072200
SBS	Chr6	24077849	G-A	Homo	INTERGENIC
SBS	Chr7	4940873	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g060500
SBS	Chr7	14488327	T-A	Hetero	INTERGENIC
SBS	Chr7	16235377	G-C	Homo	INTERGENIC
SBS	Chr7	16582761	T-C	Hetero	INTERGENIC
SBS	Chr7	16740056	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	16740074	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	18031689	C-T	Hetero	INTERGENIC
SBS	Chr7	20625775	C-G	Hetero	INTRON
SBS	Chr8	3711722	A-C	Homo	INTERGENIC
SBS	Chr8	11896513	G-T	Hetero	INTERGENIC
SBS	Chr8	17769803	T-C	Hetero	INTERGENIC
SBS	Chr8	18875049	A-G	Hetero	INTRON
SBS	Chr8	21915083	A-T	Hetero	INTRON
SBS	Chr8	26307796	A-G	Hetero	INTRON
SBS	Chr9	1647674	T-A	Hetero	INTERGENIC
SBS	Chr9	6305658	C-A	Homo	INTERGENIC
SBS	Chr9	8121568	A-G	Hetero	INTERGENIC
SBS	Chr9	19479986	T-G	Homo	INTERGENIC
SBS	Chr10	12267416	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g073200
SBS	Chr10	17915317	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g125200
SBS	Chr11	2256174	G-A	Homo	INTERGENIC
SBS	Chr11	2256175	C-A	Homo	INTERGENIC
SBS	Chr12	2304667	A-G	Hetero	INTERGENIC
SBS	Chr12	25983297	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g214900

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	467779	467780	1
Deletion	Chr4	3085032	3085039	7
Deletion	Chr3	3403866	3403867	1
Deletion	Chr2	4065720	4065724	4
Deletion	Chr12	4484260	4484264	4
Deletion	Chr7	4861874	4861889	15
Deletion	Chr1	5199537	5199538	1
Deletion	Chr2	5278421	5278422	1
Deletion	Chr12	5498082	5498087	5
Deletion	Chr11	6244827	6244838	11	OsKitaake11g074900
Deletion	Chr3	8754705	8754719	14
Deletion	Chr7	9916258	9916262	4
Deletion	Chr4	15938395	15938396	1
Deletion	Chr1	18320396	18320411	15
Deletion	Chr12	19908395	19908399	4
Deletion	Chr5	20547868	20547876	8
Deletion	Chr1	20688096	20688097	1
Deletion	Chr8	23950880	23950881	1
Deletion	Chr2	25409140	25409141	1
Deletion	Chr6	26062609	26062616	7
Deletion	Chr8	26812257	26812260	3
Deletion	Chr8	29278682	29278703	21	OsKitaake08g255300
Deletion	Chr2	31074101	31074102	1
Deletion	Chr2	35012411	35012417	6
Deletion	Chr3	35835001	35862000	26999	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes