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Mutant Information

Mutant Name	FN3637-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3637-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1801682 T-C Hetero INTERGENIC
SBS Chr1 15119766 C-T Homo INTERGENIC
SBS Chr2 7896947 A-T Homo INTERGENIC
SBS Chr2 26848555 G-A Hetero INTERGENIC
SBS Chr2 26848556 G-A Hetero INTERGENIC
SBS Chr2 27896935 T-A Hetero INTRON
SBS Chr3 9117484 G-A Homo INTERGENIC
SBS Chr3 10400945 A-G Hetero INTERGENIC
SBS Chr3 25407344 T-A Hetero INTERGENIC
SBS Chr3 25915652 G-T Homo INTERGENIC
SBS Chr3 29029776 G-T Hetero INTERGENIC
SBS Chr3 33860934 A-G Hetero INTERGENIC
SBS Chr4 8952574 G-C Hetero INTRON
SBS Chr4 12133370 C-T Hetero INTRON
SBS Chr4 25221589 G-A Hetero INTERGENIC
SBS Chr5 2717230 A-T Hetero INTERGENIC
SBS Chr5 11376974 T-C Hetero INTERGENIC
SBS Chr5 13808716 G-A Hetero INTERGENIC
SBS Chr5 24901010 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g217600
SBS Chr6 9424322 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g111400
SBS Chr6 15298134 T-C Homo INTERGENIC
SBS Chr6 16574447 C-T Hetero INTERGENIC
SBS Chr6 18702923 C-T Homo INTERGENIC
SBS Chr6 20232442 G-A Homo INTERGENIC
SBS Chr6 27144188 C-T Hetero INTRON
SBS Chr6 28972944 C-A Hetero INTERGENIC
SBS Chr7 6233756 C-G Hetero INTERGENIC
SBS Chr7 9204201 C-G Hetero INTERGENIC
SBS Chr7 11795187 T-C Hetero INTERGENIC
SBS Chr7 13486825 G-C Hetero INTERGENIC
SBS Chr7 22721013 G-A Homo SYNONYMOUS_CODING
SBS Chr8 5756448 A-G Hetero INTRON
SBS Chr8 8259365 C-G Hetero INTERGENIC
SBS Chr8 8281980 G-A Hetero INTERGENIC
SBS Chr8 21836357 G-A Hetero INTERGENIC
SBS Chr9 4870909 G-A Homo INTERGENIC
SBS Chr9 9622140 A-G Hetero INTERGENIC
SBS Chr9 10774630 T-C Hetero INTERGENIC
SBS Chr10 6437603 C-T Hetero INTERGENIC
SBS Chr10 21989977 C-A Homo NON_SYNONYMOUS_CODING OsKitaake10g177900
SBS Chr11 9254234 A-G Hetero INTERGENIC
SBS Chr11 17267100 A-C Homo INTERGENIC
SBS Chr11 19518284 A-G Hetero INTERGENIC
SBS Chr12 2380515 G-C Hetero INTRON

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 9635212 9635225 13
Deletion Chr2 10155284 10155285 1 OsKitaake02g121901
Deletion Chr11 15895417 15895419 2
Deletion Chr2 17659634 17659642 8
Deletion Chr10 19029423 19029424 1
Deletion Chr9 19472131 19472137 6
Deletion Chr12 19585456 19585457 1
Deletion Chr6 19870922 19870932 10
Deletion Chr2 20430382 20430385 3
Deletion Chr10 20934102 20934104 2
Deletion Chr6 24454001 24561000 106999 13
Deletion Chr7 25935811 25935812 1 OsKitaake07g237000
Deletion Chr7 27355552 27355561 9
Deletion Chr6 28680001 28704000 23999 7
Deletion Chr6 29487759 29487760 1
Deletion Chr2 29704001 29827000 122999 14
Deletion Chr3 31282791 31282800 9
Deletion Chr3 33311001 33322000 10999 2
Deletion Chr1 36197533 36197535 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 31799526 31799529 2
Insertion Chr9 3470695 3470697 1
Insertion Chr11 15834587 15834591 3

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 6786770 7109405
Inversion Chr4 7109407 7434368 OsKitaake04g037700
Inversion Chr4 17808994 17843374
Inversion Chr6 24136156 24452981
Inversion Chr6 24302319 24556979 OsKitaake06g217600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5509200 Chr5 11280874 OsKitaake08g060200
Translocation Chr8 5509201 Chr5 11278392 OsKitaake08g060200
Translocation Chr6 24300518 Chr2 34775950 2
Translocation Chr6 24302306 Chr2 34775941 OsKitaake02g362400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1801682	T-C	Hetero	INTERGENIC
SBS	Chr1	15119766	C-T	Homo	INTERGENIC
SBS	Chr2	7896947	A-T	Homo	INTERGENIC
SBS	Chr2	26848555	G-A	Hetero	INTERGENIC
SBS	Chr2	26848556	G-A	Hetero	INTERGENIC
SBS	Chr2	27896935	T-A	Hetero	INTRON
SBS	Chr3	9117484	G-A	Homo	INTERGENIC
SBS	Chr3	10400945	A-G	Hetero	INTERGENIC
SBS	Chr3	25407344	T-A	Hetero	INTERGENIC
SBS	Chr3	25915652	G-T	Homo	INTERGENIC
SBS	Chr3	29029776	G-T	Hetero	INTERGENIC
SBS	Chr3	33860934	A-G	Hetero	INTERGENIC
SBS	Chr4	8952574	G-C	Hetero	INTRON
SBS	Chr4	12133370	C-T	Hetero	INTRON
SBS	Chr4	25221589	G-A	Hetero	INTERGENIC
SBS	Chr5	2717230	A-T	Hetero	INTERGENIC
SBS	Chr5	11376974	T-C	Hetero	INTERGENIC
SBS	Chr5	13808716	G-A	Hetero	INTERGENIC
SBS	Chr5	24901010	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g217600
SBS	Chr6	9424322	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g111400
SBS	Chr6	15298134	T-C	Homo	INTERGENIC
SBS	Chr6	16574447	C-T	Hetero	INTERGENIC
SBS	Chr6	18702923	C-T	Homo	INTERGENIC
SBS	Chr6	20232442	G-A	Homo	INTERGENIC
SBS	Chr6	27144188	C-T	Hetero	INTRON
SBS	Chr6	28972944	C-A	Hetero	INTERGENIC
SBS	Chr7	6233756	C-G	Hetero	INTERGENIC
SBS	Chr7	9204201	C-G	Hetero	INTERGENIC
SBS	Chr7	11795187	T-C	Hetero	INTERGENIC
SBS	Chr7	13486825	G-C	Hetero	INTERGENIC
SBS	Chr7	22721013	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr8	5756448	A-G	Hetero	INTRON
SBS	Chr8	8259365	C-G	Hetero	INTERGENIC
SBS	Chr8	8281980	G-A	Hetero	INTERGENIC
SBS	Chr8	21836357	G-A	Hetero	INTERGENIC
SBS	Chr9	4870909	G-A	Homo	INTERGENIC
SBS	Chr9	9622140	A-G	Hetero	INTERGENIC
SBS	Chr9	10774630	T-C	Hetero	INTERGENIC
SBS	Chr10	6437603	C-T	Hetero	INTERGENIC
SBS	Chr10	21989977	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g177900
SBS	Chr11	9254234	A-G	Hetero	INTERGENIC
SBS	Chr11	17267100	A-C	Homo	INTERGENIC
SBS	Chr11	19518284	A-G	Hetero	INTERGENIC
SBS	Chr12	2380515	G-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	9635212	9635225	13
Deletion	Chr2	10155284	10155285	1	OsKitaake02g121901
Deletion	Chr11	15895417	15895419	2
Deletion	Chr2	17659634	17659642	8
Deletion	Chr10	19029423	19029424	1
Deletion	Chr9	19472131	19472137	6
Deletion	Chr12	19585456	19585457	1
Deletion	Chr6	19870922	19870932	10
Deletion	Chr2	20430382	20430385	3
Deletion	Chr10	20934102	20934104	2
Deletion	Chr6	24454001	24561000	106999	13
Deletion	Chr7	25935811	25935812	1	OsKitaake07g237000
Deletion	Chr7	27355552	27355561	9
Deletion	Chr6	28680001	28704000	23999	7
Deletion	Chr6	29487759	29487760	1
Deletion	Chr2	29704001	29827000	122999	14
Deletion	Chr3	31282791	31282800	9
Deletion	Chr3	33311001	33322000	10999	2
Deletion	Chr1	36197533	36197535	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6786770	7109405
Inversion	Chr4	7109407	7434368	OsKitaake04g037700
Inversion	Chr4	17808994	17843374
Inversion	Chr6	24136156	24452981
Inversion	Chr6	24302319	24556979	OsKitaake06g217600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes