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Mutant Information

Mutant Name	FN3639-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3639-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11394443 G-C Hetero INTERGENIC
SBS Chr1 11785004 G-A Homo INTERGENIC
SBS Chr1 18706913 T-A Hetero INTERGENIC
SBS Chr2 7969957 A-G Homo INTERGENIC
SBS Chr2 13211881 T-C Homo INTERGENIC
SBS Chr2 24740771 C-T Hetero INTERGENIC
SBS Chr2 26462529 G-C Homo INTERGENIC
SBS Chr2 27910972 A-G Hetero INTERGENIC
SBS Chr3 2029281 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g029000
SBS Chr3 9481967 T-A Hetero INTERGENIC
SBS Chr4 7007712 G-A Hetero INTERGENIC
SBS Chr4 12539941 G-C Hetero INTERGENIC
SBS Chr4 22821499 A-T Homo INTERGENIC
SBS Chr4 27468082 T-C Homo INTERGENIC
SBS Chr5 24655632 G-C Hetero INTERGENIC
SBS Chr5 29370961 A-T Hetero INTERGENIC
SBS Chr6 5168288 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g069300
SBS Chr6 5175125 G-A Hetero INTRON
SBS Chr6 5731952 T-C Hetero INTERGENIC
SBS Chr7 3333926 C-T Hetero INTERGENIC
SBS Chr7 23609980 T-G Hetero INTRON
SBS Chr7 27329323 G-T Hetero INTERGENIC
SBS Chr8 7372616 G-T Hetero INTERGENIC
SBS Chr8 11016047 G-A Homo INTERGENIC
SBS Chr8 14706825 A-T Hetero INTERGENIC
SBS Chr9 59631 C-A Hetero INTERGENIC
SBS Chr9 4711896 A-G Homo INTERGENIC
SBS Chr9 7330959 A-T Hetero INTERGENIC
SBS Chr9 8717685 G-C Hetero INTRON
SBS Chr9 22238230 A-T Hetero INTRON
SBS Chr10 3778110 A-G Hetero INTERGENIC
SBS Chr11 2730586 A-G Homo SYNONYMOUS_CODING
SBS Chr11 7624368 G-T Homo INTERGENIC
SBS Chr11 10610541 G-T Homo INTERGENIC
SBS Chr11 25775595 T-C Hetero INTERGENIC
SBS Chr12 17016474 G-A Hetero INTERGENIC
SBS Chr12 18742787 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1698329 1698433 104
Deletion Chr5 2382263 2382272 9
Deletion Chr10 2427634 2427635 1 OsKitaake10g019566
Deletion Chr3 9420001 9430000 9999 OsKitaake03g128100
Deletion Chr12 9611428 9611429 1
Deletion Chr3 18039436 18039438 2
Deletion Chr9 19670489 19670512 23
Deletion Chr5 24659073 24659093 20
Deletion Chr7 24838880 24838883 3
Deletion Chr11 25051434 25051435 1
Deletion Chr7 29316001 29339000 22999 4
Deletion Chr1 33358952 33358959 7

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30281148 30281151 2
Insertion Chr4 7173066 7173069 2
Insertion Chr4 25338835 25338838 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 3704941 4232845
Inversion Chr3 16895099 16985320 OsKitaake03g211600
Inversion Chr3 16895104 16985321 OsKitaake03g211600

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 708166 Chr1 14280251
Translocation Chr11 24802036 Chr1 14281178
Translocation Chr11 24802052 Chr9 697852

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11394443	G-C	Hetero	INTERGENIC
SBS	Chr1	11785004	G-A	Homo	INTERGENIC
SBS	Chr1	18706913	T-A	Hetero	INTERGENIC
SBS	Chr2	7969957	A-G	Homo	INTERGENIC
SBS	Chr2	13211881	T-C	Homo	INTERGENIC
SBS	Chr2	24740771	C-T	Hetero	INTERGENIC
SBS	Chr2	26462529	G-C	Homo	INTERGENIC
SBS	Chr2	27910972	A-G	Hetero	INTERGENIC
SBS	Chr3	2029281	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g029000
SBS	Chr3	9481967	T-A	Hetero	INTERGENIC
SBS	Chr4	7007712	G-A	Hetero	INTERGENIC
SBS	Chr4	12539941	G-C	Hetero	INTERGENIC
SBS	Chr4	22821499	A-T	Homo	INTERGENIC
SBS	Chr4	27468082	T-C	Homo	INTERGENIC
SBS	Chr5	24655632	G-C	Hetero	INTERGENIC
SBS	Chr5	29370961	A-T	Hetero	INTERGENIC
SBS	Chr6	5168288	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g069300
SBS	Chr6	5175125	G-A	Hetero	INTRON
SBS	Chr6	5731952	T-C	Hetero	INTERGENIC
SBS	Chr7	3333926	C-T	Hetero	INTERGENIC
SBS	Chr7	23609980	T-G	Hetero	INTRON
SBS	Chr7	27329323	G-T	Hetero	INTERGENIC
SBS	Chr8	7372616	G-T	Hetero	INTERGENIC
SBS	Chr8	11016047	G-A	Homo	INTERGENIC
SBS	Chr8	14706825	A-T	Hetero	INTERGENIC
SBS	Chr9	59631	C-A	Hetero	INTERGENIC
SBS	Chr9	4711896	A-G	Homo	INTERGENIC
SBS	Chr9	7330959	A-T	Hetero	INTERGENIC
SBS	Chr9	8717685	G-C	Hetero	INTRON
SBS	Chr9	22238230	A-T	Hetero	INTRON
SBS	Chr10	3778110	A-G	Hetero	INTERGENIC
SBS	Chr11	2730586	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr11	7624368	G-T	Homo	INTERGENIC
SBS	Chr11	10610541	G-T	Homo	INTERGENIC
SBS	Chr11	25775595	T-C	Hetero	INTERGENIC
SBS	Chr12	17016474	G-A	Hetero	INTERGENIC
SBS	Chr12	18742787	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1698329	1698433	104
Deletion	Chr5	2382263	2382272	9
Deletion	Chr10	2427634	2427635	1	OsKitaake10g019566
Deletion	Chr3	9420001	9430000	9999	OsKitaake03g128100
Deletion	Chr12	9611428	9611429	1
Deletion	Chr3	18039436	18039438	2
Deletion	Chr9	19670489	19670512	23
Deletion	Chr5	24659073	24659093	20
Deletion	Chr7	24838880	24838883	3
Deletion	Chr11	25051434	25051435	1
Deletion	Chr7	29316001	29339000	22999	4
Deletion	Chr1	33358952	33358959	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3704941	4232845
Inversion	Chr3	16895099	16985320	OsKitaake03g211600
Inversion	Chr3	16895104	16985321	OsKitaake03g211600

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Variant Type

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Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes