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Mutant Information

Mutant Name	FN3650-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3650-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15245871 C-T Hetero INTERGENIC
SBS Chr1 28033421 A-T Hetero INTRON
SBS Chr2 28688702 C-A Hetero INTRON
SBS Chr2 29832046 T-A Hetero INTERGENIC
SBS Chr3 6719750 G-A Hetero INTERGENIC
SBS Chr3 17402457 A-G Hetero INTRON
SBS Chr3 20300322 G-T Homo INTERGENIC
SBS Chr3 36361072 T-A Hetero INTERGENIC
SBS Chr4 29721922 G-A Hetero UTR_3_PRIME
SBS Chr5 4187291 C-A Hetero INTERGENIC
SBS Chr5 18606585 C-T Homo INTERGENIC
SBS Chr5 27520319 T-C Hetero INTERGENIC
SBS Chr5 29460028 G-C Hetero INTERGENIC
SBS Chr6 1871508 G-C Hetero INTERGENIC
SBS Chr6 18061868 C-T Homo INTERGENIC
SBS Chr6 18464999 C-G Homo INTERGENIC
SBS Chr7 8282624 T-C Homo INTERGENIC
SBS Chr7 11229947 G-T Homo INTERGENIC
SBS Chr7 14589124 C-T Homo INTERGENIC
SBS Chr7 18279590 G-T Hetero INTERGENIC
SBS Chr7 18279591 G-T Hetero INTERGENIC
SBS Chr7 20106206 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g165100
SBS Chr8 1728651 C-A Homo INTERGENIC
SBS Chr8 2249491 C-G Hetero INTERGENIC
SBS Chr8 2353129 A-G Homo INTERGENIC
SBS Chr8 3522046 A-G Hetero INTERGENIC
SBS Chr8 3840173 G-A Hetero INTERGENIC
SBS Chr9 15737111 G-C Hetero INTERGENIC
SBS Chr9 16235830 G-T Hetero INTRON
SBS Chr10 4039673 C-T Hetero INTERGENIC
SBS Chr10 14466843 A-G Hetero INTRON
SBS Chr11 3601242 T-A Hetero INTERGENIC
SBS Chr12 21514439 C-T Hetero INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3103080 3103084 4
Deletion Chr8 4817644 4817646 2
Deletion Chr11 5136262 5136267 5
Deletion Chr6 6225973 6225980 7
Deletion Chr11 6398303 6398308 5
Deletion Chr4 6680263 6680276 13
Deletion Chr4 7318140 7318142 2
Deletion Chr7 9480383 9480404 21
Deletion Chr10 10138971 10138995 24
Deletion Chr1 11942595 11942597 2
Deletion Chr1 12474666 12474670 4
Deletion Chr9 12616651 12616654 3
Deletion Chr7 13307776 13307812 36
Deletion Chr1 14875001 14912000 36999 5
Deletion Chr7 20647977 20647984 7
Deletion Chr7 22288186 22288187 1
Deletion Chr3 23071724 23071729 5
Deletion Chr11 23572795 23572799 4
Deletion Chr6 25871847 25871852 5
Deletion Chr5 26075727 26075728 1
Deletion Chr8 26222893 26222905 12
Deletion Chr11 26465831 26465832 1
Deletion Chr4 26917625 26917647 22 OsKitaake04g195400
Deletion Chr5 27514033 27514046 13
Deletion Chr1 28781299 28781301 2
Deletion Chr3 31969423 31969431 8
Deletion Chr2 33156006 33156007 1
Deletion Chr2 35135815 35135826 11

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 17263568 17263571 2
Insertion Chr5 22369061 22369065 3
Insertion Chr7 21777054 21777058 3
Insertion Chr9 8984830 8984833 2
Insertion Chr10 19774670 19774673 2
Insertion Chr12 22995057 22995062 4
Insertion Chr5 30189657 30189660 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 26174497 Chr1 31351507 OsKitaake02g259500
Translocation Chr2 26174505 Chr1 31347687 OsKitaake02g259500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15245871	C-T	Hetero	INTERGENIC
SBS	Chr1	28033421	A-T	Hetero	INTRON
SBS	Chr2	28688702	C-A	Hetero	INTRON
SBS	Chr2	29832046	T-A	Hetero	INTERGENIC
SBS	Chr3	6719750	G-A	Hetero	INTERGENIC
SBS	Chr3	17402457	A-G	Hetero	INTRON
SBS	Chr3	20300322	G-T	Homo	INTERGENIC
SBS	Chr3	36361072	T-A	Hetero	INTERGENIC
SBS	Chr4	29721922	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	4187291	C-A	Hetero	INTERGENIC
SBS	Chr5	18606585	C-T	Homo	INTERGENIC
SBS	Chr5	27520319	T-C	Hetero	INTERGENIC
SBS	Chr5	29460028	G-C	Hetero	INTERGENIC
SBS	Chr6	1871508	G-C	Hetero	INTERGENIC
SBS	Chr6	18061868	C-T	Homo	INTERGENIC
SBS	Chr6	18464999	C-G	Homo	INTERGENIC
SBS	Chr7	8282624	T-C	Homo	INTERGENIC
SBS	Chr7	11229947	G-T	Homo	INTERGENIC
SBS	Chr7	14589124	C-T	Homo	INTERGENIC
SBS	Chr7	18279590	G-T	Hetero	INTERGENIC
SBS	Chr7	18279591	G-T	Hetero	INTERGENIC
SBS	Chr7	20106206	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g165100
SBS	Chr8	1728651	C-A	Homo	INTERGENIC
SBS	Chr8	2249491	C-G	Hetero	INTERGENIC
SBS	Chr8	2353129	A-G	Homo	INTERGENIC
SBS	Chr8	3522046	A-G	Hetero	INTERGENIC
SBS	Chr8	3840173	G-A	Hetero	INTERGENIC
SBS	Chr9	15737111	G-C	Hetero	INTERGENIC
SBS	Chr9	16235830	G-T	Hetero	INTRON
SBS	Chr10	4039673	C-T	Hetero	INTERGENIC
SBS	Chr10	14466843	A-G	Hetero	INTRON
SBS	Chr11	3601242	T-A	Hetero	INTERGENIC
SBS	Chr12	21514439	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3103080	3103084	4
Deletion	Chr8	4817644	4817646	2
Deletion	Chr11	5136262	5136267	5
Deletion	Chr6	6225973	6225980	7
Deletion	Chr11	6398303	6398308	5
Deletion	Chr4	6680263	6680276	13
Deletion	Chr4	7318140	7318142	2
Deletion	Chr7	9480383	9480404	21
Deletion	Chr10	10138971	10138995	24
Deletion	Chr1	11942595	11942597	2
Deletion	Chr1	12474666	12474670	4
Deletion	Chr9	12616651	12616654	3
Deletion	Chr7	13307776	13307812	36
Deletion	Chr1	14875001	14912000	36999	5
Deletion	Chr7	20647977	20647984	7
Deletion	Chr7	22288186	22288187	1
Deletion	Chr3	23071724	23071729	5
Deletion	Chr11	23572795	23572799	4
Deletion	Chr6	25871847	25871852	5
Deletion	Chr5	26075727	26075728	1
Deletion	Chr8	26222893	26222905	12
Deletion	Chr11	26465831	26465832	1
Deletion	Chr4	26917625	26917647	22	OsKitaake04g195400
Deletion	Chr5	27514033	27514046	13
Deletion	Chr1	28781299	28781301	2
Deletion	Chr3	31969423	31969431	8
Deletion	Chr2	33156006	33156007	1
Deletion	Chr2	35135815	35135826	11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	26174497	Chr1	31351507	OsKitaake02g259500
Translocation	Chr2	26174505	Chr1	31347687	OsKitaake02g259500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes