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| Mutant Information |
|---|
| Mutant Name | FN3651-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3651-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1876113 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 22732134 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 40540994 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19068782 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 12772587 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 20612834 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 34129859 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 908341 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1258493 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 5021507 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 5674221 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 7314462 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14093673 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 5694956 | C-G | Homo | INTRON | |
| SBS | Chr6 | 24427167 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 28576209 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 28576210 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 12050021 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 16771685 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 10810311 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 26724278 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 2564669 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 630616 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9868409 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 18579452 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 3424808 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 13282948 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 24455809 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 12291625 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13128397 | G-C | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 395671 | 395672 | 1 | OsKitaake07g003500 |
| Deletion | Chr8 | 3127981 | 3127982 | 1 | |
| Deletion | Chr2 | 3169001 | 3210000 | 40999 | 7 |
| Deletion | Chr2 | 3527313 | 3527315 | 2 | |
| Deletion | Chr8 | 5581077 | 5581079 | 2 | |
| Deletion | Chr1 | 7579421 | 7579425 | 4 | |
| Deletion | Chr3 | 8472753 | 8472755 | 2 | |
| Deletion | Chr9 | 14167871 | 14167882 | 11 | |
| Deletion | Chr9 | 21304001 | 21604000 | 299999 | 65 |
| Deletion | Chr3 | 23467057 | 23467058 | 1 | |
| Deletion | Chr2 | 33543181 | 33543182 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 27689455 | 27689459 | 3 | |
| Insertion | Chr2 | 35328984 | 35328987 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 21230262 | 21647652 | |
| Inversion | Chr3 | 21386234 | 21647671 |