Search Kitaake

Mutant Information

Mutant Name	FN3652-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3652-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4582561 G-A Homo INTERGENIC
SBS Chr1 30879611 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g306600
SBS Chr2 17877506 G-A Homo INTERGENIC
SBS Chr2 24981763 C-G Hetero INTERGENIC
SBS Chr3 9542799 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 11440572 A-T Hetero INTERGENIC
SBS Chr3 24814516 C-A Homo INTERGENIC
SBS Chr4 24939051 A-G Homo INTERGENIC
SBS Chr4 27407772 C-T Hetero INTERGENIC
SBS Chr4 28548339 C-T Homo INTRON
SBS Chr5 5975620 A-G Hetero INTERGENIC
SBS Chr5 17261854 A-T Homo INTERGENIC
SBS Chr5 17781886 G-A Hetero INTERGENIC
SBS Chr5 23796166 C-T Homo INTRON
SBS Chr7 147869 A-T Hetero SPLICE_SITE_REGION
SBS Chr7 18948507 G-T Hetero INTERGENIC
SBS Chr8 15485107 C-T Homo INTERGENIC
SBS Chr8 17306460 C-T Hetero INTERGENIC
SBS Chr10 2182936 A-G Hetero INTERGENIC
SBS Chr10 4748510 C-T Hetero INTERGENIC
SBS Chr10 14033226 C-A Homo INTRON
SBS Chr10 16853743 G-A Homo INTERGENIC
SBS Chr10 23561820 G-T Homo INTRON
SBS Chr11 13084025 C-A Homo INTERGENIC
SBS Chr11 16703563 C-A Homo INTERGENIC
SBS Chr11 22297917 C-T Homo INTERGENIC
SBS Chr12 3719288 A-G Hetero UTR_3_PRIME
SBS Chr12 4428682 A-G Hetero INTERGENIC
SBS Chr12 4428683 A-T Hetero INTERGENIC
SBS Chr12 6191211 G-T Hetero INTERGENIC
SBS Chr12 6615316 G-A Hetero UTR_3_PRIME
SBS Chr12 23276470 A-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 27001 50000 22999
Deletion Chr5 3485526 3485528 2
Deletion Chr5 6230001 6520000 289999 21
Deletion Chr11 10157363 10157365 2
Deletion Chr10 13985173 13985174 1
Deletion Chr4 14576745 14576753 8
Deletion Chr7 15077482 15077487 5
Deletion Chr7 16865212 16865218 6
Deletion Chr10 16924143 16924153 10
Deletion Chr10 22162982 22162994 12
Deletion Chr7 22581221 22581232 11
Deletion Chr1 23399126 23399132 6
Deletion Chr5 23804414 23804418 4
Deletion Chr8 24870023 24870027 4
Deletion Chr5 30226513 30226514 1
Deletion Chr2 35361276 35361286 10
Deletion Chr2 35610001 35633000 22999 2
Deletion Chr1 43045949 43045950 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 18846243 19141116 OsKitaake11g148500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4582561	G-A	Homo	INTERGENIC
SBS	Chr1	30879611	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g306600
SBS	Chr2	17877506	G-A	Homo	INTERGENIC
SBS	Chr2	24981763	C-G	Hetero	INTERGENIC
SBS	Chr3	9542799	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	11440572	A-T	Hetero	INTERGENIC
SBS	Chr3	24814516	C-A	Homo	INTERGENIC
SBS	Chr4	24939051	A-G	Homo	INTERGENIC
SBS	Chr4	27407772	C-T	Hetero	INTERGENIC
SBS	Chr4	28548339	C-T	Homo	INTRON
SBS	Chr5	5975620	A-G	Hetero	INTERGENIC
SBS	Chr5	17261854	A-T	Homo	INTERGENIC
SBS	Chr5	17781886	G-A	Hetero	INTERGENIC
SBS	Chr5	23796166	C-T	Homo	INTRON
SBS	Chr7	147869	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr7	18948507	G-T	Hetero	INTERGENIC
SBS	Chr8	15485107	C-T	Homo	INTERGENIC
SBS	Chr8	17306460	C-T	Hetero	INTERGENIC
SBS	Chr10	2182936	A-G	Hetero	INTERGENIC
SBS	Chr10	4748510	C-T	Hetero	INTERGENIC
SBS	Chr10	14033226	C-A	Homo	INTRON
SBS	Chr10	16853743	G-A	Homo	INTERGENIC
SBS	Chr10	23561820	G-T	Homo	INTRON
SBS	Chr11	13084025	C-A	Homo	INTERGENIC
SBS	Chr11	16703563	C-A	Homo	INTERGENIC
SBS	Chr11	22297917	C-T	Homo	INTERGENIC
SBS	Chr12	3719288	A-G	Hetero	UTR_3_PRIME
SBS	Chr12	4428682	A-G	Hetero	INTERGENIC
SBS	Chr12	4428683	A-T	Hetero	INTERGENIC
SBS	Chr12	6191211	G-T	Hetero	INTERGENIC
SBS	Chr12	6615316	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	23276470	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	27001	50000	22999
Deletion	Chr5	3485526	3485528	2
Deletion	Chr5	6230001	6520000	289999	21
Deletion	Chr11	10157363	10157365	2
Deletion	Chr10	13985173	13985174	1
Deletion	Chr4	14576745	14576753	8
Deletion	Chr7	15077482	15077487	5
Deletion	Chr7	16865212	16865218	6
Deletion	Chr10	16924143	16924153	10
Deletion	Chr10	22162982	22162994	12
Deletion	Chr7	22581221	22581232	11
Deletion	Chr1	23399126	23399132	6
Deletion	Chr5	23804414	23804418	4
Deletion	Chr8	24870023	24870027	4
Deletion	Chr5	30226513	30226514	1
Deletion	Chr2	35361276	35361286	10
Deletion	Chr2	35610001	35633000	22999	2
Deletion	Chr1	43045949	43045950	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	18846243	19141116	OsKitaake11g148500

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes