Search Kitaake

Mutant Information

Mutant Name	FN3653-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3653-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 969426 C-A Hetero UTR_3_PRIME
SBS Chr1 19372281 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g193550
SBS Chr1 40398407 C-G Hetero INTRON
SBS Chr1 43487255 C-T Homo UTR_3_PRIME
SBS Chr2 17842634 C-G Hetero INTERGENIC
SBS Chr2 23523443 G-A Hetero INTERGENIC
SBS Chr2 30001975 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g304600
SBS Chr2 33911321 A-T Homo INTERGENIC
SBS Chr2 33911322 C-T Homo INTERGENIC
SBS Chr3 20579594 T-G Hetero INTERGENIC
SBS Chr4 73396 A-G Hetero INTERGENIC
SBS Chr4 401352 C-T Hetero INTERGENIC
SBS Chr4 14760683 C-T Hetero INTERGENIC
SBS Chr4 24462167 C-A Hetero INTERGENIC
SBS Chr4 35607731 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g303900
SBS Chr5 12842127 G-A Hetero INTERGENIC
SBS Chr5 14797818 A-G Hetero INTERGENIC
SBS Chr5 25273560 G-A Hetero INTERGENIC
SBS Chr6 11258466 C-T Hetero UTR_5_PRIME
SBS Chr6 18868466 G-A Hetero INTERGENIC
SBS Chr6 28418883 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g260200
SBS Chr7 1394211 T-C Hetero INTERGENIC
SBS Chr7 5253782 G-A Hetero INTERGENIC
SBS Chr7 15809768 G-A Hetero INTERGENIC
SBS Chr7 21433648 C-T Hetero INTERGENIC
SBS Chr7 29610435 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g285400
SBS Chr8 5998529 C-T Hetero INTERGENIC
SBS Chr8 6155858 T-C Hetero INTERGENIC
SBS Chr8 25789767 A-G Hetero INTERGENIC
SBS Chr9 8605562 G-C Homo INTERGENIC
SBS Chr9 14443999 C-T Hetero INTERGENIC
SBS Chr10 4128322 A-G Hetero INTERGENIC
SBS Chr10 8973537 C-T Hetero INTERGENIC
SBS Chr11 18935670 C-A Hetero SPLICE_SITE_REGION
SBS Chr12 13598073 G-A Hetero INTERGENIC
SBS Chr12 13598074 G-A Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2563748 2563750 2
Deletion Chr12 11718234 11718388 154
Deletion Chr4 27816001 27844000 27999 7
Deletion Chr1 29427008 29427010 2
Deletion Chr5 30211755 30211756 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9464022 9464025 2
Insertion Chr1 29201755 29201759 3
Insertion Chr12 24011129 24011132 2
Insertion Chr7 8498072 8498074 1
Insertion Chr7 12000189 12000191 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 3604660 3740498 OsKitaake01g048400

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 2222048 Chr2 12964772 OsKitaake02g144900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	969426	C-A	Hetero	UTR_3_PRIME
SBS	Chr1	19372281	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g193550
SBS	Chr1	40398407	C-G	Hetero	INTRON
SBS	Chr1	43487255	C-T	Homo	UTR_3_PRIME
SBS	Chr2	17842634	C-G	Hetero	INTERGENIC
SBS	Chr2	23523443	G-A	Hetero	INTERGENIC
SBS	Chr2	30001975	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g304600
SBS	Chr2	33911321	A-T	Homo	INTERGENIC
SBS	Chr2	33911322	C-T	Homo	INTERGENIC
SBS	Chr3	20579594	T-G	Hetero	INTERGENIC
SBS	Chr4	73396	A-G	Hetero	INTERGENIC
SBS	Chr4	401352	C-T	Hetero	INTERGENIC
SBS	Chr4	14760683	C-T	Hetero	INTERGENIC
SBS	Chr4	24462167	C-A	Hetero	INTERGENIC
SBS	Chr4	35607731	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g303900
SBS	Chr5	12842127	G-A	Hetero	INTERGENIC
SBS	Chr5	14797818	A-G	Hetero	INTERGENIC
SBS	Chr5	25273560	G-A	Hetero	INTERGENIC
SBS	Chr6	11258466	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	18868466	G-A	Hetero	INTERGENIC
SBS	Chr6	28418883	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g260200
SBS	Chr7	1394211	T-C	Hetero	INTERGENIC
SBS	Chr7	5253782	G-A	Hetero	INTERGENIC
SBS	Chr7	15809768	G-A	Hetero	INTERGENIC
SBS	Chr7	21433648	C-T	Hetero	INTERGENIC
SBS	Chr7	29610435	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g285400
SBS	Chr8	5998529	C-T	Hetero	INTERGENIC
SBS	Chr8	6155858	T-C	Hetero	INTERGENIC
SBS	Chr8	25789767	A-G	Hetero	INTERGENIC
SBS	Chr9	8605562	G-C	Homo	INTERGENIC
SBS	Chr9	14443999	C-T	Hetero	INTERGENIC
SBS	Chr10	4128322	A-G	Hetero	INTERGENIC
SBS	Chr10	8973537	C-T	Hetero	INTERGENIC
SBS	Chr11	18935670	C-A	Hetero	SPLICE_SITE_REGION
SBS	Chr12	13598073	G-A	Hetero	INTERGENIC
SBS	Chr12	13598074	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2563748	2563750	2
Deletion	Chr12	11718234	11718388	154
Deletion	Chr4	27816001	27844000	27999	7
Deletion	Chr1	29427008	29427010	2
Deletion	Chr5	30211755	30211756	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3604660	3740498	OsKitaake01g048400

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes