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| Mutant Information |
|---|
| Mutant Name | FN3656-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3656-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2667097 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 12457454 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 20542550 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 31462220 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 31608175 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 18761387 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 25754305 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 17078548 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 17078549 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 7725238 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g039100 |
| SBS | Chr4 | 35305237 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1334986 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11981853 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12514115 | C-A | Hetero | INTRON | |
| SBS | Chr6 | 19540559 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 23160771 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 11900608 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 12298845 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26718303 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 7658426 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8986956 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 10233537 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 2305453 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 5800810 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 5800815 | A-C | Homo | INTERGENIC | |
| SBS | Chr10 | 11034714 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 23733870 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 6436557 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20177927 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 79512 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 190353 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g002100 |
| SBS | Chr12 | 16991868 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21379945 | C-T | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 512061 | 512065 | 4 | |
| Deletion | Chr11 | 4380531 | 4380532 | 1 | |
| Deletion | Chr8 | 11630774 | 11630780 | 6 | |
| Deletion | Chr3 | 12014132 | 12014133 | 1 | |
| Deletion | Chr10 | 13111865 | 13111867 | 2 | |
| Deletion | Chr3 | 15509298 | 15509305 | 7 | |
| Deletion | Chr3 | 16707813 | 16707820 | 7 | |
| Deletion | Chr2 | 19484262 | 19484264 | 2 | |
| Deletion | Chr8 | 23235369 | 23235373 | 4 | OsKitaake08g178600 |
| Deletion | Chr11 | 24711362 | 24711363 | 1 | |
| Deletion | Chr11 | 26419326 | 26419327 | 1 | |
| Deletion | Chr2 | 27288723 | 27288724 | 1 | OsKitaake02g274100 |
| Deletion | Chr3 | 30484949 | 30484950 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 2962949 | 2962951 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 24609055 | 24959522 | OsKitaake07g223300 |
| Inversion | Chr7 | 24609061 | 24959520 | OsKitaake07g223300 |