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| Mutant Information |
|---|
| Mutant Name | FN3657-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3657-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3041616 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 3265510 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 4826158 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g064400 |
| SBS | Chr1 | 14520224 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 29130340 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 7890393 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9504548 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 11326975 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 23464253 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 25980619 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 33655831 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 33655832 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 33825144 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 15316302 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 22200898 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 34433949 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 12018660 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 21350331 | A-C | Homo | INTERGENIC | |
| SBS | Chr6 | 203987 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 9805467 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24753645 | A-G | Hetero | INTRON | |
| SBS | Chr6 | 25035078 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 26625370 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20060369 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 27589940 | T-C | Homo | INTRON | |
| SBS | Chr10 | 4808237 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5361950 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 13837611 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 21976761 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 21976763 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 21976769 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 3125780 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 5696784 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 15695792 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 2256176 | G-A | Homo | INTRON | |
| SBS | Chr12 | 12942871 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14019776 | G-A | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2245825 | 2245829 | 4 | |
| Deletion | Chr7 | 4440001 | 4452000 | 11999 | OsKitaake07g055700 |
| Deletion | Chr8 | 4979658 | 4979659 | 1 | |
| Deletion | Chr5 | 8183786 | 8183876 | 90 | |
| Deletion | Chr11 | 8566416 | 8566427 | 11 | |
| Deletion | Chr2 | 9133956 | 9133965 | 9 | |
| Deletion | Chr4 | 9974001 | 9989000 | 14999 | |
| Deletion | Chr3 | 10020001 | 10112000 | 91999 | 14 |
| Deletion | Chr8 | 10531261 | 10531262 | 1 | |
| Deletion | Chr4 | 21673680 | 21673694 | 14 | |
| Deletion | Chr12 | 25511957 | 25511959 | 2 | |
| Deletion | Chr1 | 32640881 | 32640883 | 2 | OsKitaake01g331100 |
| Deletion | Chr1 | 39457441 | 39457448 | 7 | |
| Deletion | Chr1 | 41828891 | 41828895 | 4 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 13129988 | 13129992 | 3 | |
| Insertion | Chr4 | 10383378 | 10383381 | 2 | |
| Insertion | Chr6 | 5627146 | 5627154 | 7 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 25982298 | 26128757 | |
| Inversion | Chr3 | 25998060 | 26128752 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 473541 | Chr2 | 30144876 | 2 |
| Translocation | Chr6 | 473550 | Chr2 | 30145112 | 2 |