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| Mutant Information |
|---|
| Mutant Name | FN3658-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3658-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10366121 | G-T | Homo | INTRON | |
| SBS | Chr1 | 16193659 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 22954149 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 22954150 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 25051186 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 25112668 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 30473080 | T-A | Hetero | INTRON | |
| SBS | Chr2 | 31408394 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 31768049 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 6607977 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 6607978 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g094300 |
| SBS | Chr3 | 11299542 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 17867022 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 29075843 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 36296237 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 36787984 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 36994496 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 19099283 | A-T | Homo | INTRON | |
| SBS | Chr5 | 2411555 | A-C | Homo | INTERGENIC | |
| SBS | Chr5 | 4319610 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 26634240 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 18724939 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 21927795 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 23360417 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 23588422 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 3592934 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 12768497 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8312336 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8723062 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 9401357 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11999659 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 16330311 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g129900 |
| SBS | Chr12 | 20389646 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 23877333 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 24502604 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26017825 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g215400 |
| SBS | Chr12 | 26062282 | C-T | Homo | INTRON |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 143730 | 143734 | 4 | OsKitaake02g002300 |
| Deletion | Chr6 | 1030232 | 1030236 | 4 | |
| Deletion | Chr3 | 7358951 | 7358968 | 17 | OsKitaake03g102500 |
| Deletion | Chr1 | 7762604 | 7762605 | 1 | |
| Deletion | Chr1 | 21186865 | 21186871 | 6 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 26836593 | 27330947 |