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Mutant Information

Mutant Name	FN3659-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3659-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10662302 G-A Hetero INTERGENIC
SBS Chr1 11247778 T-G Hetero INTRON
SBS Chr1 15650572 G-A Hetero INTERGENIC
SBS Chr1 18288920 G-A Hetero INTERGENIC
SBS Chr2 2288502 G-T Homo INTERGENIC
SBS Chr2 21432229 G-A Hetero INTERGENIC
SBS Chr2 30916889 C-T Hetero INTERGENIC
SBS Chr3 9067854 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g124400
SBS Chr3 12967029 C-A Hetero INTRON
SBS Chr3 15814694 G-A Hetero INTERGENIC
SBS Chr3 16127541 C-T Hetero INTERGENIC
SBS Chr3 16182311 A-G Hetero INTERGENIC
SBS Chr3 16539280 C-T Hetero INTERGENIC
SBS Chr3 18990796 A-G Hetero INTERGENIC
SBS Chr3 23087387 T-C Hetero INTERGENIC
SBS Chr3 29035757 G-A Hetero INTERGENIC
SBS Chr4 1337681 C-A Hetero INTERGENIC
SBS Chr4 22290795 G-A Hetero INTERGENIC
SBS Chr4 23758405 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g150300
SBS Chr4 35476067 C-T Hetero INTRON
SBS Chr5 9675967 T-C Hetero INTERGENIC
SBS Chr5 14800371 T-C Hetero INTERGENIC
SBS Chr5 19538645 A-T Hetero INTRON
SBS Chr6 2466160 C-T Homo INTERGENIC
SBS Chr6 28300892 G-A Hetero INTERGENIC
SBS Chr7 19772264 T-G Hetero INTRON
SBS Chr7 22534359 T-G Hetero INTERGENIC
SBS Chr8 3903579 G-A Hetero INTERGENIC
SBS Chr8 6785341 G-C Hetero INTERGENIC
SBS Chr8 8025770 A-G Hetero INTERGENIC
SBS Chr8 27491885 C-T Hetero INTERGENIC
SBS Chr8 28192241 A-G Hetero INTRON
SBS Chr9 20301798 G-A Hetero INTERGENIC
SBS Chr10 4100023 G-A Hetero INTERGENIC
SBS Chr10 6719728 G-T Homo INTERGENIC
SBS Chr10 7445494 G-A Homo INTERGENIC
SBS Chr10 20032796 G-T Hetero INTERGENIC
SBS Chr11 2200558 A-C Hetero INTRON
SBS Chr11 7843544 G-A Hetero START_GAINED
SBS Chr11 8029937 A-T Hetero UTR_3_PRIME
SBS Chr11 8412577 G-T Hetero INTRON
SBS Chr11 15378761 G-A Hetero INTERGENIC
SBS Chr12 11372596 G-A Hetero INTERGENIC
SBS Chr12 15081777 G-C Hetero INTERGENIC
SBS Chr12 16541197 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1664078 1664084 6
Deletion Chr5 2886564 2886569 5
Deletion Chr5 5168602 5168613 11
Deletion Chr2 6364857 6364858 1
Deletion Chr9 8039652 8039657 5
Deletion Chr2 8524538 8524541 3
Deletion Chr3 8990239 8990251 12
Deletion Chr10 13788177 13788189 12
Deletion Chr9 15455223 15455228 5 OsKitaake09g108500
Deletion Chr2 20564208 20564224 16
Deletion Chr4 21605143 21605145 2
Deletion Chr2 22920059 22920061 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 11892064 11892067 2
Insertion Chr3 13053394 13053399 4
Insertion Chr4 34336476 34336481 4
Insertion Chr10 14692418 14692421 2
Insertion Chr12 23807665 23807668 2
Insertion Chr5 21767326 21767332 5

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 15530182 15872753 OsKitaake05g119000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10662302	G-A	Hetero	INTERGENIC
SBS	Chr1	11247778	T-G	Hetero	INTRON
SBS	Chr1	15650572	G-A	Hetero	INTERGENIC
SBS	Chr1	18288920	G-A	Hetero	INTERGENIC
SBS	Chr2	2288502	G-T	Homo	INTERGENIC
SBS	Chr2	21432229	G-A	Hetero	INTERGENIC
SBS	Chr2	30916889	C-T	Hetero	INTERGENIC
SBS	Chr3	9067854	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g124400
SBS	Chr3	12967029	C-A	Hetero	INTRON
SBS	Chr3	15814694	G-A	Hetero	INTERGENIC
SBS	Chr3	16127541	C-T	Hetero	INTERGENIC
SBS	Chr3	16182311	A-G	Hetero	INTERGENIC
SBS	Chr3	16539280	C-T	Hetero	INTERGENIC
SBS	Chr3	18990796	A-G	Hetero	INTERGENIC
SBS	Chr3	23087387	T-C	Hetero	INTERGENIC
SBS	Chr3	29035757	G-A	Hetero	INTERGENIC
SBS	Chr4	1337681	C-A	Hetero	INTERGENIC
SBS	Chr4	22290795	G-A	Hetero	INTERGENIC
SBS	Chr4	23758405	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g150300
SBS	Chr4	35476067	C-T	Hetero	INTRON
SBS	Chr5	9675967	T-C	Hetero	INTERGENIC
SBS	Chr5	14800371	T-C	Hetero	INTERGENIC
SBS	Chr5	19538645	A-T	Hetero	INTRON
SBS	Chr6	2466160	C-T	Homo	INTERGENIC
SBS	Chr6	28300892	G-A	Hetero	INTERGENIC
SBS	Chr7	19772264	T-G	Hetero	INTRON
SBS	Chr7	22534359	T-G	Hetero	INTERGENIC
SBS	Chr8	3903579	G-A	Hetero	INTERGENIC
SBS	Chr8	6785341	G-C	Hetero	INTERGENIC
SBS	Chr8	8025770	A-G	Hetero	INTERGENIC
SBS	Chr8	27491885	C-T	Hetero	INTERGENIC
SBS	Chr8	28192241	A-G	Hetero	INTRON
SBS	Chr9	20301798	G-A	Hetero	INTERGENIC
SBS	Chr10	4100023	G-A	Hetero	INTERGENIC
SBS	Chr10	6719728	G-T	Homo	INTERGENIC
SBS	Chr10	7445494	G-A	Homo	INTERGENIC
SBS	Chr10	20032796	G-T	Hetero	INTERGENIC
SBS	Chr11	2200558	A-C	Hetero	INTRON
SBS	Chr11	7843544	G-A	Hetero	START_GAINED
SBS	Chr11	8029937	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	8412577	G-T	Hetero	INTRON
SBS	Chr11	15378761	G-A	Hetero	INTERGENIC
SBS	Chr12	11372596	G-A	Hetero	INTERGENIC
SBS	Chr12	15081777	G-C	Hetero	INTERGENIC
SBS	Chr12	16541197	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1664078	1664084	6
Deletion	Chr5	2886564	2886569	5
Deletion	Chr5	5168602	5168613	11
Deletion	Chr2	6364857	6364858	1
Deletion	Chr9	8039652	8039657	5
Deletion	Chr2	8524538	8524541	3
Deletion	Chr3	8990239	8990251	12
Deletion	Chr10	13788177	13788189	12
Deletion	Chr9	15455223	15455228	5	OsKitaake09g108500
Deletion	Chr2	20564208	20564224	16
Deletion	Chr4	21605143	21605145	2
Deletion	Chr2	22920059	22920061	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	15530182	15872753	OsKitaake05g119000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes