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| Mutant Information |
|---|
| Mutant Name | FN3661-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3661-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4863222 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 12126886 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 28546438 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 28546439 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 38842885 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 38842886 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 39526415 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 9950703 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 14584374 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 14681403 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 18288324 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19477228 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21830646 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 28587513 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 10853522 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 12898292 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 29056868 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 33247615 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 6986250 | T-C | Homo | INTRON | |
| SBS | Chr5 | 8477298 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15980002 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 21843363 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 4319362 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19972403 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 23862905 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 25009380 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 28759832 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 12395859 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 19767022 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2989337 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 8625061 | T-C | Hetero | INTRON | |
| SBS | Chr8 | 25898974 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10456225 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 12943967 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4713099 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 8388074 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8458279 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 9673755 | C-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 4830842 | 4830851 | 9 | |
| Deletion | Chr10 | 5446524 | 5446525 | 1 | |
| Deletion | Chr8 | 7010752 | 7010755 | 3 | |
| Deletion | Chr7 | 7598262 | 7598264 | 2 | |
| Deletion | Chr11 | 9665625 | 9665627 | 2 | |
| Deletion | Chr12 | 14680891 | 14680893 | 2 | |
| Deletion | Chr6 | 17787580 | 17787582 | 2 | |
| Deletion | Chr4 | 17968001 | 18208000 | 239999 | 10 |
| Deletion | Chr7 | 21820916 | 21820918 | 2 | |
| Deletion | Chr3 | 24162001 | 24176000 | 13999 | OsKitaake03g258100 |
| Deletion | Chr2 | 33028780 | 33028781 | 1 | |
| Deletion | Chr2 | 35533001 | 35545000 | 11999 | OsKitaake02g373300 |
| Deletion | Chr4 | 36301870 | 36301882 | 12 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 4007299 | 4007301 | 1 | |
| Insertion | Chr3 | 17977650 | 17977653 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 18662617 | 19473140 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 7356582 | Chr4 | 33862743 | |
| Translocation | Chr11 | 7356586 | Chr4 | 33863287 | |
| Translocation | Chr11 | 29435082 | Chr4 | 14831410 | OsKitaake11g241400 |