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Mutant Information

Mutant Name	FN3662-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3662-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9942285 T-C Hetero INTERGENIC
SBS Chr1 13390747 A-G Hetero INTERGENIC
SBS Chr1 20026035 A-G Hetero INTERGENIC
SBS Chr1 23166373 T-C Hetero INTRON
SBS Chr1 28202127 G-A Homo INTERGENIC
SBS Chr1 32302508 T-C Homo INTERGENIC
SBS Chr2 9479187 C-A Homo INTERGENIC
SBS Chr2 26408167 C-T Hetero INTERGENIC
SBS Chr2 28994951 T-A Hetero INTERGENIC
SBS Chr2 34874364 T-A Hetero INTRON
SBS Chr2 35282697 C-T Hetero INTERGENIC
SBS Chr2 35282741 T-A Hetero INTERGENIC
SBS Chr3 115759 C-T Hetero UTR_5_PRIME
SBS Chr3 9411213 T-G Hetero INTERGENIC
SBS Chr3 18437416 T-A Hetero UTR_5_PRIME
SBS Chr3 29739676 A-T Homo INTERGENIC
SBS Chr4 6761984 G-A Homo INTERGENIC
SBS Chr5 5400171 G-A Hetero INTERGENIC
SBS Chr5 7812783 A-C Homo INTRON
SBS Chr6 29654434 G-T Hetero INTERGENIC
SBS Chr7 5911339 T-C Hetero INTERGENIC
SBS Chr7 11058598 G-A Hetero INTERGENIC
SBS Chr7 27443775 T-C Homo INTERGENIC
SBS Chr8 17660927 T-G Homo INTERGENIC
SBS Chr9 2828971 A-C Hetero INTERGENIC
SBS Chr9 7388586 C-G Hetero INTRON
SBS Chr9 17266411 G-A Homo INTERGENIC
SBS Chr10 4190369 G-A Hetero INTERGENIC
SBS Chr10 5293726 A-G Hetero INTERGENIC
SBS Chr10 12528327 C-T Hetero INTERGENIC
SBS Chr10 12666460 G-A Hetero UTR_3_PRIME
SBS Chr10 12867563 G-A Hetero INTERGENIC
SBS Chr10 23453179 G-A Hetero INTERGENIC
SBS Chr11 9496191 T-A Hetero INTRON
SBS Chr11 17210357 A-T Hetero INTERGENIC
SBS Chr11 23264544 G-T Homo INTERGENIC
SBS Chr12 10511963 G-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1714718 1714720 2
Deletion Chr12 6838364 6838369 5
Deletion Chr2 7274886 7274918 32
Deletion Chr12 10833001 10845000 11999 OsKitaake12g100400
Deletion Chr4 13031858 13031865 7
Deletion Chr4 15959842 15959846 4
Deletion Chr8 18833216 18833219 3 OsKitaake08g139600
Deletion Chr2 19534636 19534651 15
Deletion Chr3 19701001 19771000 69999 OsKitaake03g229200
Deletion Chr3 19906001 19918000 11999
Deletion Chr10 20255972 20255974 2
Deletion Chr8 26792001 26817000 24999 5
Deletion Chr5 27607854 27607874 20
Deletion Chr7 28338620 28338621 1
Deletion Chr2 29110439 29110441 2 OsKitaake02g292900
Deletion Chr3 29525192 29525195 3 OsKitaake03g307700
Deletion Chr6 29756001 29862000 105999 16
Deletion Chr5 30165667 30165668 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 11785930 11785932 1
Insertion Chr11 3383179 3383181 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 6526517 Chr8 24942352 OsKitaake09g037000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9942285	T-C	Hetero	INTERGENIC
SBS	Chr1	13390747	A-G	Hetero	INTERGENIC
SBS	Chr1	20026035	A-G	Hetero	INTERGENIC
SBS	Chr1	23166373	T-C	Hetero	INTRON
SBS	Chr1	28202127	G-A	Homo	INTERGENIC
SBS	Chr1	32302508	T-C	Homo	INTERGENIC
SBS	Chr2	9479187	C-A	Homo	INTERGENIC
SBS	Chr2	26408167	C-T	Hetero	INTERGENIC
SBS	Chr2	28994951	T-A	Hetero	INTERGENIC
SBS	Chr2	34874364	T-A	Hetero	INTRON
SBS	Chr2	35282697	C-T	Hetero	INTERGENIC
SBS	Chr2	35282741	T-A	Hetero	INTERGENIC
SBS	Chr3	115759	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	9411213	T-G	Hetero	INTERGENIC
SBS	Chr3	18437416	T-A	Hetero	UTR_5_PRIME
SBS	Chr3	29739676	A-T	Homo	INTERGENIC
SBS	Chr4	6761984	G-A	Homo	INTERGENIC
SBS	Chr5	5400171	G-A	Hetero	INTERGENIC
SBS	Chr5	7812783	A-C	Homo	INTRON
SBS	Chr6	29654434	G-T	Hetero	INTERGENIC
SBS	Chr7	5911339	T-C	Hetero	INTERGENIC
SBS	Chr7	11058598	G-A	Hetero	INTERGENIC
SBS	Chr7	27443775	T-C	Homo	INTERGENIC
SBS	Chr8	17660927	T-G	Homo	INTERGENIC
SBS	Chr9	2828971	A-C	Hetero	INTERGENIC
SBS	Chr9	7388586	C-G	Hetero	INTRON
SBS	Chr9	17266411	G-A	Homo	INTERGENIC
SBS	Chr10	4190369	G-A	Hetero	INTERGENIC
SBS	Chr10	5293726	A-G	Hetero	INTERGENIC
SBS	Chr10	12528327	C-T	Hetero	INTERGENIC
SBS	Chr10	12666460	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	12867563	G-A	Hetero	INTERGENIC
SBS	Chr10	23453179	G-A	Hetero	INTERGENIC
SBS	Chr11	9496191	T-A	Hetero	INTRON
SBS	Chr11	17210357	A-T	Hetero	INTERGENIC
SBS	Chr11	23264544	G-T	Homo	INTERGENIC
SBS	Chr12	10511963	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1714718	1714720	2
Deletion	Chr12	6838364	6838369	5
Deletion	Chr2	7274886	7274918	32
Deletion	Chr12	10833001	10845000	11999	OsKitaake12g100400
Deletion	Chr4	13031858	13031865	7
Deletion	Chr4	15959842	15959846	4
Deletion	Chr8	18833216	18833219	3	OsKitaake08g139600
Deletion	Chr2	19534636	19534651	15
Deletion	Chr3	19701001	19771000	69999	OsKitaake03g229200
Deletion	Chr3	19906001	19918000	11999
Deletion	Chr10	20255972	20255974	2
Deletion	Chr8	26792001	26817000	24999	5
Deletion	Chr5	27607854	27607874	20
Deletion	Chr7	28338620	28338621	1
Deletion	Chr2	29110439	29110441	2	OsKitaake02g292900
Deletion	Chr3	29525192	29525195	3	OsKitaake03g307700
Deletion	Chr6	29756001	29862000	105999	16
Deletion	Chr5	30165667	30165668	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	6526517	Chr8	24942352	OsKitaake09g037000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes