Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3663-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3663-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 406120 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 987576 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 20795888 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 33686550 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 37401028 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 41299136 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 18818677 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 20228421 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g197200 |
| SBS | Chr2 | 30004193 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 35149858 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 1829999 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g026100 |
| SBS | Chr3 | 25345192 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 28304979 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 33597657 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 777255 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3585967 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 5678123 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11167950 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11512452 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11010404 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 21688329 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 8128205 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 14165043 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 17448399 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g162300 |
| SBS | Chr8 | 5978914 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 6301548 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g067700 |
| SBS | Chr8 | 7947786 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14273221 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 20589064 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 3461788 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 4510358 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 5244656 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6442226 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16080042 | G-C | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 4852693 | 4852698 | 5 | |
| Deletion | Chr4 | 8284001 | 8304000 | 19999 | OsKitaake04g043200 |
| Deletion | Chr2 | 13309755 | 13309758 | 3 | |
| Deletion | Chr1 | 15268088 | 15268101 | 13 | |
| Deletion | Chr10 | 16466342 | 16466348 | 6 | |
| Deletion | Chr5 | 21822001 | 21895000 | 72999 | 6 |
| Deletion | Chr1 | 24153174 | 24153181 | 7 | OsKitaake01g232200 |
| Deletion | Chr3 | 27758492 | 27758494 | 2 | |
| Deletion | Chr4 | 34870989 | 34870991 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 22646196 | 22646199 | 2 | |
| Insertion | Chr7 | 15267114 | 15267117 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 629657 | 1587080 | OsKitaake01g113700 |
| Inversion | Chr2 | 26601151 | 26601404 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 9932110 | Chr2 | 18640751 | OsKitaake02g183600 |
| Translocation | Chr7 | 9932123 | Chr2 | 18640048 | OsKitaake02g183600 |
| Translocation | Chr4 | 10480839 | Chr1 | 34050003 | OsKitaake01g350400 |
| Translocation | Chr4 | 10482558 | Chr1 | 34049997 | OsKitaake01g350400 |