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Mutant Information

Mutant Name	FN3664-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3664-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 43824567 C-T Hetero INTERGENIC
SBS Chr1 43965685 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 19283166 G-C Homo INTERGENIC
SBS Chr3 31528180 A-G Hetero INTERGENIC
SBS Chr4 3107627 G-A Hetero INTERGENIC
SBS Chr4 7343180 G-A Hetero INTERGENIC
SBS Chr4 21770353 T-A Hetero INTERGENIC
SBS Chr4 25192672 C-T Hetero INTERGENIC
SBS Chr4 28620928 T-A Hetero INTERGENIC
SBS Chr5 9032813 C-T Hetero INTERGENIC
SBS Chr5 20610674 T-A Hetero INTERGENIC
SBS Chr5 27299024 C-A Homo UTR_3_PRIME
SBS Chr6 14628359 C-T Hetero INTERGENIC
SBS Chr6 15764920 G-A Hetero INTERGENIC
SBS Chr6 27704736 C-T Homo INTERGENIC
SBS Chr7 532912 T-A Hetero INTERGENIC
SBS Chr7 12963075 C-A Homo INTERGENIC
SBS Chr7 27166813 G-A Hetero INTERGENIC
SBS Chr8 4955207 C-T Hetero INTERGENIC
SBS Chr8 9002105 C-T Hetero INTERGENIC
SBS Chr8 10021428 T-C Homo INTERGENIC
SBS Chr9 11247840 C-G Hetero INTERGENIC
SBS Chr10 15857385 A-G Hetero INTERGENIC
SBS Chr11 12784078 G-A Homo INTERGENIC
SBS Chr11 26857993 T-A Hetero INTERGENIC
SBS Chr12 386950 A-T Homo INTRON
SBS Chr12 386959 A-G Homo INTRON
SBS Chr12 4598293 T-C Homo INTERGENIC
SBS Chr12 13985288 C-T Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 384526 384528 2
Deletion Chr1 887053 887061 8
Deletion Chr3 3221209 3221213 4
Deletion Chr8 5138613 5138635 22
Deletion Chr11 6110483 6110488 5
Deletion Chr1 6949014 6949018 4
Deletion Chr9 10242260 10242261 1
Deletion Chr8 12319360 12319369 9
Deletion Chr3 13082656 13082672 16 OsKitaake03g175400
Deletion Chr5 15354001 15423000 68999 3
Deletion Chr5 15449001 15523000 73999 2
Deletion Chr5 15530001 15659000 128999 10
Deletion Chr8 18275297 18275300 3
Deletion Chr3 19885537 19885549 12
Deletion Chr9 20390620 20390622 2
Deletion Chr12 21719543 21719544 1
Deletion Chr11 21746116 21746149 33
Deletion Chr8 24824288 24824290 2
Deletion Chr7 24920382 24920383 1
Deletion Chr3 26205001 26312000 106999
Deletion Chr3 27048067 27048069 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6263665 6263668 2
Insertion Chr5 25853517 25853520 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 3849393 3985779
Inversion Chr8 3849400 3985778
Inversion Chr9 5439165 5509363
Inversion Chr9 5439178 5509382
Inversion Chr5 15355199 15359118 OsKitaake05g118100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	43824567	C-T	Hetero	INTERGENIC
SBS	Chr1	43965685	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	19283166	G-C	Homo	INTERGENIC
SBS	Chr3	31528180	A-G	Hetero	INTERGENIC
SBS	Chr4	3107627	G-A	Hetero	INTERGENIC
SBS	Chr4	7343180	G-A	Hetero	INTERGENIC
SBS	Chr4	21770353	T-A	Hetero	INTERGENIC
SBS	Chr4	25192672	C-T	Hetero	INTERGENIC
SBS	Chr4	28620928	T-A	Hetero	INTERGENIC
SBS	Chr5	9032813	C-T	Hetero	INTERGENIC
SBS	Chr5	20610674	T-A	Hetero	INTERGENIC
SBS	Chr5	27299024	C-A	Homo	UTR_3_PRIME
SBS	Chr6	14628359	C-T	Hetero	INTERGENIC
SBS	Chr6	15764920	G-A	Hetero	INTERGENIC
SBS	Chr6	27704736	C-T	Homo	INTERGENIC
SBS	Chr7	532912	T-A	Hetero	INTERGENIC
SBS	Chr7	12963075	C-A	Homo	INTERGENIC
SBS	Chr7	27166813	G-A	Hetero	INTERGENIC
SBS	Chr8	4955207	C-T	Hetero	INTERGENIC
SBS	Chr8	9002105	C-T	Hetero	INTERGENIC
SBS	Chr8	10021428	T-C	Homo	INTERGENIC
SBS	Chr9	11247840	C-G	Hetero	INTERGENIC
SBS	Chr10	15857385	A-G	Hetero	INTERGENIC
SBS	Chr11	12784078	G-A	Homo	INTERGENIC
SBS	Chr11	26857993	T-A	Hetero	INTERGENIC
SBS	Chr12	386950	A-T	Homo	INTRON
SBS	Chr12	386959	A-G	Homo	INTRON
SBS	Chr12	4598293	T-C	Homo	INTERGENIC
SBS	Chr12	13985288	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	384526	384528	2
Deletion	Chr1	887053	887061	8
Deletion	Chr3	3221209	3221213	4
Deletion	Chr8	5138613	5138635	22
Deletion	Chr11	6110483	6110488	5
Deletion	Chr1	6949014	6949018	4
Deletion	Chr9	10242260	10242261	1
Deletion	Chr8	12319360	12319369	9
Deletion	Chr3	13082656	13082672	16	OsKitaake03g175400
Deletion	Chr5	15354001	15423000	68999	3
Deletion	Chr5	15449001	15523000	73999	2
Deletion	Chr5	15530001	15659000	128999	10
Deletion	Chr8	18275297	18275300	3
Deletion	Chr3	19885537	19885549	12
Deletion	Chr9	20390620	20390622	2
Deletion	Chr12	21719543	21719544	1
Deletion	Chr11	21746116	21746149	33
Deletion	Chr8	24824288	24824290	2
Deletion	Chr7	24920382	24920383	1
Deletion	Chr3	26205001	26312000	106999
Deletion	Chr3	27048067	27048069	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3849393	3985779
Inversion	Chr8	3849400	3985778
Inversion	Chr9	5439165	5509363
Inversion	Chr9	5439178	5509382
Inversion	Chr5	15355199	15359118	OsKitaake05g118100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes