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Mutant Information

Mutant Name	FN3665-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3665-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 62

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1780672 C-T Hetero INTERGENIC
SBS Chr1 11618732 C-G Hetero INTERGENIC
SBS Chr1 15555749 C-T Hetero INTERGENIC
SBS Chr1 21310445 C-T Hetero INTERGENIC
SBS Chr1 32938678 G-A Hetero INTERGENIC
SBS Chr1 34878754 G-T Hetero INTERGENIC
SBS Chr1 37125881 G-A Hetero INTERGENIC
SBS Chr2 6616392 G-A Hetero INTERGENIC
SBS Chr2 12678708 A-G Hetero INTRON
SBS Chr2 12678711 A-G Hetero INTRON
SBS Chr2 17146874 A-G Hetero INTERGENIC
SBS Chr2 18182514 G-A Hetero INTERGENIC
SBS Chr2 24612457 T-A Homo INTERGENIC
SBS Chr2 32105590 C-T Hetero INTERGENIC
SBS Chr3 161370 G-C Homo INTERGENIC
SBS Chr3 9654764 T-G Homo INTERGENIC
SBS Chr3 15772222 G-T Hetero INTERGENIC
SBS Chr3 24458281 G-A Hetero INTERGENIC
SBS Chr3 31363117 T-C Hetero INTERGENIC
SBS Chr4 1581821 C-T Hetero INTERGENIC
SBS Chr4 9901101 C-T Hetero INTERGENIC
SBS Chr4 10671961 G-A Hetero INTERGENIC
SBS Chr4 19305900 G-C Hetero INTERGENIC
SBS Chr5 2764240 C-A Homo INTERGENIC
SBS Chr5 3909454 A-G Hetero UTR_3_PRIME
SBS Chr5 6265345 A-T Hetero INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr5 16269960 T-C Hetero INTERGENIC
SBS Chr6 1526012 C-T Hetero INTERGENIC
SBS Chr6 3558067 G-A Homo INTERGENIC
SBS Chr6 7100758 C-T Hetero INTERGENIC
SBS Chr6 21103757 C-A Hetero INTERGENIC
SBS Chr6 23061833 G-A Hetero INTERGENIC
SBS Chr6 30543241 T-A Hetero UTR_5_PRIME
SBS Chr7 1168474 C-A Homo INTRON
SBS Chr7 2330501 C-T Hetero INTERGENIC
SBS Chr7 6782184 C-T Hetero INTERGENIC
SBS Chr7 6931681 G-A Hetero INTERGENIC
SBS Chr7 11548312 T-A Homo INTERGENIC
SBS Chr7 12403295 G-T Homo INTERGENIC
SBS Chr7 13861016 C-A Hetero INTERGENIC
SBS Chr7 16446225 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g135300
SBS Chr7 16925878 C-T Hetero INTERGENIC
SBS Chr7 17192477 G-A Hetero INTERGENIC
SBS Chr7 22907820 A-T Hetero INTRON
SBS Chr8 9401287 C-T Homo INTERGENIC
SBS Chr8 19404422 C-T Homo INTERGENIC
SBS Chr8 19463499 C-A Hetero INTERGENIC
SBS Chr8 28507826 C-T Hetero INTERGENIC
SBS Chr9 903020 A-G Hetero INTERGENIC
SBS Chr9 3746142 C-A Hetero INTERGENIC
SBS Chr9 3986787 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 5613852 G-C Hetero INTERGENIC
SBS Chr9 8185715 C-T Hetero INTERGENIC
SBS Chr9 9720317 G-A Hetero INTERGENIC
SBS Chr9 11679486 G-A Hetero INTERGENIC
SBS Chr9 16363786 G-A Hetero INTERGENIC
SBS Chr10 13677544 A-C Hetero INTERGENIC
SBS Chr10 15273904 G-T Hetero INTERGENIC
SBS Chr10 15273905 A-T Hetero INTERGENIC
SBS Chr11 723288 C-T Homo INTERGENIC
SBS Chr12 14485184 G-A Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 115456 115465 9
Deletion Chr2 760380 760381 1
Deletion Chr10 1406928 1406937 9
Deletion Chr9 4072708 4072711 3
Deletion Chr1 4870703 4870704 1
Deletion Chr10 4963714 4963715 1
Deletion Chr3 5870260 5870261 1
Deletion Chr5 5930631 5930632 1
Deletion Chr7 8326461 8326463 2
Deletion Chr7 10892925 10892927 2
Deletion Chr10 11193072 11193074 2
Deletion Chr8 14502876 14502884 8
Deletion Chr1 14913860 14913868 8
Deletion Chr2 15936084 15936085 1 OsKitaake02g165300
Deletion Chr8 16083578 16083582 4
Deletion Chr12 16612473 16612483 10
Deletion Chr6 23456271 23456273 2
Deletion Chr11 24945926 24945928 2
Deletion Chr2 26288087 26288105 18
Deletion Chr6 27208534 27208535 1
Deletion Chr6 28106779 28106791 12
Deletion Chr5 28613567 28613570 3
Deletion Chr1 29998018 29998025 7

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43983026 43983029 2
Insertion Chr2 960592 960598 5
Insertion Chr2 30602361 30602364 2
Insertion Chr3 5070714 5070717 2
Insertion Chr3 14519147 14519150 2
Insertion Chr4 18607403 18607413 9
Insertion Chr6 27884444 27884447 2
Insertion Chr7 22444928 22444931 2
Insertion Chr8 3379517 3379520 2
Insertion Chr8 4609436 4609440 3

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 1494750 1577815
Inversion Chr11 18723362 19616480 OsKitaake11g145300
Inversion Chr1 31665965 31797427
Inversion Chr1 31665974 31797439
Inversion Chr2 33217442 33222864 OsKitaake02g341600
Inversion Chr2 33217450 33222887 OsKitaake02g341600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 1476386 Chr3 34196190
Translocation Chr4 1585177 Chr3 34209874
Translocation Chr4 33799825 Chr3 34196457 OsKitaake04g281100
Translocation Chr4 33813019 Chr3 34196438 OsKitaake04g281300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1780672	C-T	Hetero	INTERGENIC
SBS	Chr1	11618732	C-G	Hetero	INTERGENIC
SBS	Chr1	15555749	C-T	Hetero	INTERGENIC
SBS	Chr1	21310445	C-T	Hetero	INTERGENIC
SBS	Chr1	32938678	G-A	Hetero	INTERGENIC
SBS	Chr1	34878754	G-T	Hetero	INTERGENIC
SBS	Chr1	37125881	G-A	Hetero	INTERGENIC
SBS	Chr2	6616392	G-A	Hetero	INTERGENIC
SBS	Chr2	12678708	A-G	Hetero	INTRON
SBS	Chr2	12678711	A-G	Hetero	INTRON
SBS	Chr2	17146874	A-G	Hetero	INTERGENIC
SBS	Chr2	18182514	G-A	Hetero	INTERGENIC
SBS	Chr2	24612457	T-A	Homo	INTERGENIC
SBS	Chr2	32105590	C-T	Hetero	INTERGENIC
SBS	Chr3	161370	G-C	Homo	INTERGENIC
SBS	Chr3	9654764	T-G	Homo	INTERGENIC
SBS	Chr3	15772222	G-T	Hetero	INTERGENIC
SBS	Chr3	24458281	G-A	Hetero	INTERGENIC
SBS	Chr3	31363117	T-C	Hetero	INTERGENIC
SBS	Chr4	1581821	C-T	Hetero	INTERGENIC
SBS	Chr4	9901101	C-T	Hetero	INTERGENIC
SBS	Chr4	10671961	G-A	Hetero	INTERGENIC
SBS	Chr4	19305900	G-C	Hetero	INTERGENIC
SBS	Chr5	2764240	C-A	Homo	INTERGENIC
SBS	Chr5	3909454	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	6265345	A-T	Hetero	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr5	16269960	T-C	Hetero	INTERGENIC
SBS	Chr6	1526012	C-T	Hetero	INTERGENIC
SBS	Chr6	3558067	G-A	Homo	INTERGENIC
SBS	Chr6	7100758	C-T	Hetero	INTERGENIC
SBS	Chr6	21103757	C-A	Hetero	INTERGENIC
SBS	Chr6	23061833	G-A	Hetero	INTERGENIC
SBS	Chr6	30543241	T-A	Hetero	UTR_5_PRIME
SBS	Chr7	1168474	C-A	Homo	INTRON
SBS	Chr7	2330501	C-T	Hetero	INTERGENIC
SBS	Chr7	6782184	C-T	Hetero	INTERGENIC
SBS	Chr7	6931681	G-A	Hetero	INTERGENIC
SBS	Chr7	11548312	T-A	Homo	INTERGENIC
SBS	Chr7	12403295	G-T	Homo	INTERGENIC
SBS	Chr7	13861016	C-A	Hetero	INTERGENIC
SBS	Chr7	16446225	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g135300
SBS	Chr7	16925878	C-T	Hetero	INTERGENIC
SBS	Chr7	17192477	G-A	Hetero	INTERGENIC
SBS	Chr7	22907820	A-T	Hetero	INTRON
SBS	Chr8	9401287	C-T	Homo	INTERGENIC
SBS	Chr8	19404422	C-T	Homo	INTERGENIC
SBS	Chr8	19463499	C-A	Hetero	INTERGENIC
SBS	Chr8	28507826	C-T	Hetero	INTERGENIC
SBS	Chr9	903020	A-G	Hetero	INTERGENIC
SBS	Chr9	3746142	C-A	Hetero	INTERGENIC
SBS	Chr9	3986787	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	5613852	G-C	Hetero	INTERGENIC
SBS	Chr9	8185715	C-T	Hetero	INTERGENIC
SBS	Chr9	9720317	G-A	Hetero	INTERGENIC
SBS	Chr9	11679486	G-A	Hetero	INTERGENIC
SBS	Chr9	16363786	G-A	Hetero	INTERGENIC
SBS	Chr10	13677544	A-C	Hetero	INTERGENIC
SBS	Chr10	15273904	G-T	Hetero	INTERGENIC
SBS	Chr10	15273905	A-T	Hetero	INTERGENIC
SBS	Chr11	723288	C-T	Homo	INTERGENIC
SBS	Chr12	14485184	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	115456	115465	9
Deletion	Chr2	760380	760381	1
Deletion	Chr10	1406928	1406937	9
Deletion	Chr9	4072708	4072711	3
Deletion	Chr1	4870703	4870704	1
Deletion	Chr10	4963714	4963715	1
Deletion	Chr3	5870260	5870261	1
Deletion	Chr5	5930631	5930632	1
Deletion	Chr7	8326461	8326463	2
Deletion	Chr7	10892925	10892927	2
Deletion	Chr10	11193072	11193074	2
Deletion	Chr8	14502876	14502884	8
Deletion	Chr1	14913860	14913868	8
Deletion	Chr2	15936084	15936085	1	OsKitaake02g165300
Deletion	Chr8	16083578	16083582	4
Deletion	Chr12	16612473	16612483	10
Deletion	Chr6	23456271	23456273	2
Deletion	Chr11	24945926	24945928	2
Deletion	Chr2	26288087	26288105	18
Deletion	Chr6	27208534	27208535	1
Deletion	Chr6	28106779	28106791	12
Deletion	Chr5	28613567	28613570	3
Deletion	Chr1	29998018	29998025	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1494750	1577815
Inversion	Chr11	18723362	19616480	OsKitaake11g145300
Inversion	Chr1	31665965	31797427
Inversion	Chr1	31665974	31797439
Inversion	Chr2	33217442	33222864	OsKitaake02g341600
Inversion	Chr2	33217450	33222887	OsKitaake02g341600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes