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| Mutant Information |
|---|
| Mutant Name | FN3666-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3666-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 44
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1823363 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g021800 |
| SBS | Chr1 | 1916858 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 7649004 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 10585521 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16246026 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 26231642 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 32499597 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18360436 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31410707 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 8672305 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 8672306 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 10491691 | A-C | Hetero | INTRON | |
| SBS | Chr3 | 13771519 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 17900738 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 23365881 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 33163731 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 36541524 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 13743485 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 20559360 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 28329023 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 6024735 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 6559844 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 3163953 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 14258841 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24430022 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 29893405 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 5999668 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 7090316 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 8819433 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 8890009 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 21589318 | C-G | Hetero | INTRON | |
| SBS | Chr8 | 23867460 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 17668140 | A-G | Hetero | INTRON | |
| SBS | Chr10 | 8719279 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 8719280 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 9047310 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14697763 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 4426356 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 5037129 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 13241876 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 25040196 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 25654147 | G-A | Homo | INTRON | |
| SBS | Chr12 | 1148795 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5961375 | T-C | Homo | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 7502424 | 7502434 | 10 | |
| Deletion | Chr3 | 12891498 | 12891501 | 3 | OsKitaake03g173200 |
| Deletion | Chr7 | 14175566 | 14175574 | 8 | |
| Deletion | Chr3 | 14541464 | 14541467 | 3 | |
| Deletion | Chr1 | 16219355 | 16219364 | 9 | |
| Deletion | Chr8 | 17866769 | 17866771 | 2 | |
| Deletion | Chr11 | 25655061 | 25655068 | 7 | |
| Deletion | Chr4 | 28443371 | 28443379 | 8 | |
| Deletion | Chr1 | 28553786 | 28553793 | 7 | |
| Deletion | Chr2 | 35327424 | 35327425 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 35557318 | 35557320 | 1 | OsKitaake01g376200  |
| Insertion | Chr4 | 3369908 | 3369910 | 1 | |
| Insertion | Chr10 | 17254297 | 17254300 | 2 |