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Mutant Information

Mutant Name	FN3667-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3667-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 352923 A-G Homo INTRON
SBS Chr1 15321059 T-C Hetero INTERGENIC
SBS Chr1 16709022 C-T Hetero INTERGENIC
SBS Chr1 26626089 T-A Hetero INTERGENIC
SBS Chr1 35920517 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g380600
SBS Chr1 36160055 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g384000
SBS Chr1 38065120 C-T Hetero INTRON
SBS Chr1 42789991 C-A Hetero INTERGENIC
SBS Chr1 42932896 T-A Hetero INTERGENIC
SBS Chr2 4923977 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 16158161 G-A Hetero INTERGENIC
SBS Chr2 18770427 C-A Hetero INTERGENIC
SBS Chr2 32545624 C-A Hetero INTERGENIC
SBS Chr2 32892398 A-T Hetero INTERGENIC
SBS Chr2 36855275 C-T Hetero INTERGENIC
SBS Chr3 7555425 G-T Hetero INTERGENIC
SBS Chr3 9104896 G-A Homo INTERGENIC
SBS Chr3 11952663 T-G Hetero INTERGENIC
SBS Chr3 16265196 A-G Hetero INTERGENIC
SBS Chr3 16424691 C-T Homo UTR_5_PRIME
SBS Chr3 30221306 A-G Hetero INTRON
SBS Chr4 9613847 T-C Hetero INTERGENIC
SBS Chr5 28091964 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g259800
SBS Chr6 8311971 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g104300
SBS Chr6 23502156 C-T Hetero INTRON
SBS Chr6 26539888 C-G Homo INTERGENIC
SBS Chr7 449304 A-C Homo INTRON
SBS Chr7 4669307 G-A Hetero INTERGENIC
SBS Chr7 18946461 A-G Hetero INTERGENIC
SBS Chr7 24863497 T-A Homo START_GAINED
SBS Chr8 4437315 C-T Hetero UTR_3_PRIME
SBS Chr8 6449921 G-C Homo INTERGENIC
SBS Chr8 7095780 C-G Hetero INTERGENIC
SBS Chr8 19804683 A-G Homo INTERGENIC
SBS Chr9 13458707 A-G Hetero INTERGENIC
SBS Chr9 16311374 C-A Homo INTERGENIC
SBS Chr9 22487877 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g204600
SBS Chr10 5325159 C-A Hetero INTERGENIC
SBS Chr10 13281143 G-A Hetero INTERGENIC
SBS Chr11 9738621 A-T Hetero INTRON
SBS Chr11 10795967 C-A Hetero UTR_5_PRIME
SBS Chr12 4159070 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g056800
SBS Chr12 8903399 G-A Hetero INTERGENIC
SBS Chr12 18149438 T-C Hetero INTRON
SBS Chr12 18715472 C-T Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 130092 130119 27
Deletion Chr8 3459001 3533000 73999 8
Deletion Chr2 5384075 5384076 1
Deletion Chr4 6378295 6378296 1
Deletion Chr1 6827021 6827026 5
Deletion Chr8 6925590 6925595 5
Deletion Chr5 9506629 9506637 8
Deletion Chr5 10256849 10256855 6
Deletion Chr1 10631001 10711000 79999 7
Deletion Chr1 10718001 10797000 78999 4
Deletion Chr9 16333331 16333332 1
Deletion Chr12 16355558 16355560 2
Deletion Chr5 17128373 17128382 9
Deletion Chr9 18314443 18314454 11
Deletion Chr3 21968001 21986000 17999 OsKitaake03g240900
Deletion Chr5 22401740 22401741 1
Deletion Chr3 25527317 25527320 3
Deletion Chr3 25941480 25941481 1
Deletion Chr2 35687001 35702000 14999 3
Deletion Chr2 36616001 36642000 25999 4
Deletion Chr1 41015906 41015912 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22728723 22728726 2
Insertion Chr1 33814419 33814423 3
Insertion Chr5 3801012 3801016 3
Insertion Chr6 23619501 23619504 2
Insertion Chr9 10853902 10853905 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 3072694 Chr1 24859179
Translocation Chr8 3072785 Chr1 24960229 OsKitaake01g241200
Translocation Chr12 12144990 Chr2 18532437
Translocation Chr12 12145667 Chr2 18532448

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	352923	A-G	Homo	INTRON
SBS	Chr1	15321059	T-C	Hetero	INTERGENIC
SBS	Chr1	16709022	C-T	Hetero	INTERGENIC
SBS	Chr1	26626089	T-A	Hetero	INTERGENIC
SBS	Chr1	35920517	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g380600
SBS	Chr1	36160055	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g384000
SBS	Chr1	38065120	C-T	Hetero	INTRON
SBS	Chr1	42789991	C-A	Hetero	INTERGENIC
SBS	Chr1	42932896	T-A	Hetero	INTERGENIC
SBS	Chr2	4923977	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	16158161	G-A	Hetero	INTERGENIC
SBS	Chr2	18770427	C-A	Hetero	INTERGENIC
SBS	Chr2	32545624	C-A	Hetero	INTERGENIC
SBS	Chr2	32892398	A-T	Hetero	INTERGENIC
SBS	Chr2	36855275	C-T	Hetero	INTERGENIC
SBS	Chr3	7555425	G-T	Hetero	INTERGENIC
SBS	Chr3	9104896	G-A	Homo	INTERGENIC
SBS	Chr3	11952663	T-G	Hetero	INTERGENIC
SBS	Chr3	16265196	A-G	Hetero	INTERGENIC
SBS	Chr3	16424691	C-T	Homo	UTR_5_PRIME
SBS	Chr3	30221306	A-G	Hetero	INTRON
SBS	Chr4	9613847	T-C	Hetero	INTERGENIC
SBS	Chr5	28091964	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g259800
SBS	Chr6	8311971	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g104300
SBS	Chr6	23502156	C-T	Hetero	INTRON
SBS	Chr6	26539888	C-G	Homo	INTERGENIC
SBS	Chr7	449304	A-C	Homo	INTRON
SBS	Chr7	4669307	G-A	Hetero	INTERGENIC
SBS	Chr7	18946461	A-G	Hetero	INTERGENIC
SBS	Chr7	24863497	T-A	Homo	START_GAINED
SBS	Chr8	4437315	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	6449921	G-C	Homo	INTERGENIC
SBS	Chr8	7095780	C-G	Hetero	INTERGENIC
SBS	Chr8	19804683	A-G	Homo	INTERGENIC
SBS	Chr9	13458707	A-G	Hetero	INTERGENIC
SBS	Chr9	16311374	C-A	Homo	INTERGENIC
SBS	Chr9	22487877	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g204600
SBS	Chr10	5325159	C-A	Hetero	INTERGENIC
SBS	Chr10	13281143	G-A	Hetero	INTERGENIC
SBS	Chr11	9738621	A-T	Hetero	INTRON
SBS	Chr11	10795967	C-A	Hetero	UTR_5_PRIME
SBS	Chr12	4159070	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g056800
SBS	Chr12	8903399	G-A	Hetero	INTERGENIC
SBS	Chr12	18149438	T-C	Hetero	INTRON
SBS	Chr12	18715472	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	130092	130119	27
Deletion	Chr8	3459001	3533000	73999	8
Deletion	Chr2	5384075	5384076	1
Deletion	Chr4	6378295	6378296	1
Deletion	Chr1	6827021	6827026	5
Deletion	Chr8	6925590	6925595	5
Deletion	Chr5	9506629	9506637	8
Deletion	Chr5	10256849	10256855	6
Deletion	Chr1	10631001	10711000	79999	7
Deletion	Chr1	10718001	10797000	78999	4
Deletion	Chr9	16333331	16333332	1
Deletion	Chr12	16355558	16355560	2
Deletion	Chr5	17128373	17128382	9
Deletion	Chr9	18314443	18314454	11
Deletion	Chr3	21968001	21986000	17999	OsKitaake03g240900
Deletion	Chr5	22401740	22401741	1
Deletion	Chr3	25527317	25527320	3
Deletion	Chr3	25941480	25941481	1
Deletion	Chr2	35687001	35702000	14999	3
Deletion	Chr2	36616001	36642000	25999	4
Deletion	Chr1	41015906	41015912	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3072694	Chr1	24859179
Translocation	Chr8	3072785	Chr1	24960229	OsKitaake01g241200
Translocation	Chr12	12144990	Chr2	18532437
Translocation	Chr12	12145667	Chr2	18532448

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes