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Mutant Information

Mutant Name	FN3668-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3668-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6159710	A-T	Hetero	INTERGENIC
SBS	Chr1	16896041	G-C	Hetero	INTRON
SBS	Chr1	22171638	G-A	Homo	INTERGENIC
SBS	Chr2	13781121	G-C	Homo	INTRON
SBS	Chr2	15617513	A-G	Homo	INTERGENIC
SBS	Chr2	19287846	G-A	Hetero	INTERGENIC
SBS	Chr3	3512583	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g048700
SBS	Chr3	17185188	G-C	Homo	INTERGENIC
SBS	Chr3	25145597	T-C	Homo	INTERGENIC
SBS	Chr4	254862	G-T	Hetero	INTERGENIC
SBS	Chr4	254863	G-T	Hetero	INTERGENIC
SBS	Chr4	23043925	C-T	Hetero	INTRON
SBS	Chr4	23801733	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	23931543	C-T	Hetero	INTERGENIC
SBS	Chr4	28290282	C-T	Hetero	INTERGENIC
SBS	Chr5	19840258	C-A	Hetero	INTERGENIC
SBS	Chr5	20665372	C-T	Hetero	INTERGENIC
SBS	Chr6	13034989	A-G	Hetero	UTR_3_PRIME
SBS	Chr8	6580789	T-C	Hetero	INTERGENIC
SBS	Chr8	12251375	T-C	Hetero	INTERGENIC
SBS	Chr8	26106786	C-A	Hetero	INTRON
SBS	Chr8	26106788	T-C	Hetero	INTRON
SBS	Chr8	29004260	G-A	Hetero	INTRON
SBS	Chr9	1329683	T-A	Hetero	INTERGENIC
SBS	Chr9	19968353	T-C	Hetero	INTERGENIC
SBS	Chr9	20937501	C-T	Hetero	INTERGENIC
SBS	Chr10	9117272	T-C	Hetero	INTERGENIC
SBS	Chr10	13756660	G-A	Hetero	INTERGENIC
SBS	Chr10	17050125	T-C	Hetero	INTERGENIC
SBS	Chr10	21536223	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g171500
SBS	Chr11	7451733	A-T	Hetero	INTERGENIC
SBS	Chr11	13006741	C-T	Hetero	INTERGENIC
SBS	Chr12	8080804	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	13569891	C-T	Hetero	INTERGENIC
SBS	Chr12	19900313	T-C	Hetero	INTERGENIC

Deletions: 9

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	7076558	7076559	1
Deletion	Chr7	8951336	8951342	6
Deletion	Chr5	13533238	13533243	5
Deletion	Chr2	15299227	15299238	11
Deletion	Chr5	18126002	18126004	2
Deletion	Chr10	20357886	20357887	1
Deletion	Chr12	20376520	20376526	6
Deletion	Chr1	22222196	22222210	14
Deletion	Chr4	33173145	33173149	4	OsKitaake04g270200

Insertions: 1

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr2	23455247	23455250	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1739648	2296507	OsKitaake05g020266
Inversion	Chr10	7642043	8072966	OsKitaake10g051000

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	1789303	Chr5	18283478	OsKitaake05g142500
Translocation	Chr6	1789305	Chr5	18283769	OsKitaake05g142500
Translocation	Chr5	2296512	Chr4	23791522
Translocation	Chr5	2296960	Chr4	23791524
Translocation	Chr5	2504782	Chr4	23791081	OsKitaake05g028600
Translocation	Chr9	7387176	Chr5	2297657	OsKitaake09g042300
Translocation	Chr9	7387178	Chr4	23791520	2
Translocation	Chr4	14394290	Chr1	26784385
Translocation	Chr11	26628751	Chr5	18283477	OsKitaake05g142500