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Mutant Information

Mutant Name	FN3669-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3669-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1365202 C-A Homo INTERGENIC
SBS Chr1 8891351 C-T Homo UTR_5_PRIME
SBS Chr2 14265444 G-A Homo INTERGENIC
SBS Chr2 14266001 T-C Homo INTERGENIC
SBS Chr2 17270020 C-T Homo INTERGENIC
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr4 7286379 G-T Hetero INTERGENIC
SBS Chr4 15216199 C-T Hetero INTERGENIC
SBS Chr5 11981006 A-G Homo INTERGENIC
SBS Chr5 13777042 A-G Homo INTERGENIC
SBS Chr5 14408989 C-T Homo INTERGENIC
SBS Chr7 12448243 A-G Homo INTERGENIC
SBS Chr10 6870454 C-A Hetero INTERGENIC
SBS Chr10 6870455 C-T Homo INTERGENIC
SBS Chr10 22449762 A-C Hetero INTERGENIC
SBS Chr10 22594007 T-C Hetero INTERGENIC
SBS Chr11 11960885 G-A Hetero INTERGENIC
SBS Chr12 14624655 G-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2800310 2800322 12
Deletion Chr5 11926031 11926033 2
Deletion Chr2 13825345 13825655 310
Deletion Chr3 21440621 21440628 7
Deletion Chr1 25095346 25095349 3
Deletion Chr6 26102001 26493000 390999 52
Deletion Chr1 26514306 26514307 1
Deletion Chr1 31371325 31371327 2
Deletion Chr1 35836001 35879000 42999 6
Deletion Chr1 39330849 39330852 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 14265979 14265981 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 19755104 20087688
Inversion Chr6 19755107 20092505

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13874451 Chr9 18734906 2
Translocation Chr10 13874510 Chr9 18735216 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1365202	C-A	Homo	INTERGENIC
SBS	Chr1	8891351	C-T	Homo	UTR_5_PRIME
SBS	Chr2	14265444	G-A	Homo	INTERGENIC
SBS	Chr2	14266001	T-C	Homo	INTERGENIC
SBS	Chr2	17270020	C-T	Homo	INTERGENIC
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr4	7286379	G-T	Hetero	INTERGENIC
SBS	Chr4	15216199	C-T	Hetero	INTERGENIC
SBS	Chr5	11981006	A-G	Homo	INTERGENIC
SBS	Chr5	13777042	A-G	Homo	INTERGENIC
SBS	Chr5	14408989	C-T	Homo	INTERGENIC
SBS	Chr7	12448243	A-G	Homo	INTERGENIC
SBS	Chr10	6870454	C-A	Hetero	INTERGENIC
SBS	Chr10	6870455	C-T	Homo	INTERGENIC
SBS	Chr10	22449762	A-C	Hetero	INTERGENIC
SBS	Chr10	22594007	T-C	Hetero	INTERGENIC
SBS	Chr11	11960885	G-A	Hetero	INTERGENIC
SBS	Chr12	14624655	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2800310	2800322	12
Deletion	Chr5	11926031	11926033	2
Deletion	Chr2	13825345	13825655	310
Deletion	Chr3	21440621	21440628	7
Deletion	Chr1	25095346	25095349	3
Deletion	Chr6	26102001	26493000	390999	52
Deletion	Chr1	26514306	26514307	1
Deletion	Chr1	31371325	31371327	2
Deletion	Chr1	35836001	35879000	42999	6
Deletion	Chr1	39330849	39330852	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	19755104	20087688
Inversion	Chr6	19755107	20092505

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes