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Mutant Information

Mutant Name	FN3670-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3670-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5163946 T-C Homo INTERGENIC
SBS Chr1 7073834 A-G Hetero INTERGENIC
SBS Chr1 11184082 C-G Homo INTERGENIC
SBS Chr1 11710372 A-G Homo INTERGENIC
SBS Chr1 40112336 G-A Hetero INTERGENIC
SBS Chr2 17860981 G-T Hetero INTERGENIC
SBS Chr2 18449287 A-T Hetero INTERGENIC
SBS Chr2 24666300 T-A Hetero INTERGENIC
SBS Chr3 15829157 T-G Hetero INTRON
SBS Chr3 16218640 T-C Hetero INTERGENIC
SBS Chr3 19427306 G-A Hetero INTERGENIC
SBS Chr3 26572745 C-T Hetero INTERGENIC
SBS Chr5 6885155 T-C Homo INTERGENIC
SBS Chr5 9586894 A-T Homo INTERGENIC
SBS Chr5 10815920 C-T Hetero INTERGENIC
SBS Chr6 3383673 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g047500
SBS Chr6 5983210 G-A Hetero INTERGENIC
SBS Chr6 14055730 T-C Hetero INTERGENIC
SBS Chr6 23538146 G-C Hetero INTERGENIC
SBS Chr6 28630750 G-C Hetero INTERGENIC
SBS Chr7 15564734 T-C Hetero INTERGENIC
SBS Chr8 3449957 T-A Hetero INTERGENIC
SBS Chr8 15754011 C-T Hetero INTERGENIC
SBS Chr8 25627631 G-A Hetero INTERGENIC
SBS Chr9 11120816 A-T Hetero INTERGENIC
SBS Chr9 18323120 C-T Hetero INTERGENIC
SBS Chr10 13013100 A-G Homo INTERGENIC
SBS Chr11 9059080 T-G Hetero INTERGENIC
SBS Chr11 13502547 C-T Hetero INTERGENIC
SBS Chr12 1009099 T-C Homo NON_SYNONYMOUS_CODING OsKitaake12g015300
SBS Chr12 13285687 G-T Hetero INTERGENIC
SBS Chr12 24040222 T-C Hetero UTR_3_PRIME

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 3331650 3331663 13
Deletion Chr4 3463818 3463819 1
Deletion Chr12 5206509 5206510 1
Deletion Chr6 6803409 6803413 4
Deletion Chr11 7338513 7338514 1
Deletion Chr5 8039840 8039845 5
Deletion Chr2 9962899 9962907 8
Deletion Chr11 15130717 15130719 2
Deletion Chr7 18428838 18428845 7
Deletion Chr12 19303524 19303531 7
Deletion Chr3 19457939 19457940 1
Deletion Chr9 21924957 21924958 1
Deletion Chr2 33489550 33489552 2
Deletion Chr2 33695030 33695036 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 14408820 14408823 2
Insertion Chr11 22690676 22690679 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 19374826 19608941
Inversion Chr4 19374835 19608963

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5163946	T-C	Homo	INTERGENIC
SBS	Chr1	7073834	A-G	Hetero	INTERGENIC
SBS	Chr1	11184082	C-G	Homo	INTERGENIC
SBS	Chr1	11710372	A-G	Homo	INTERGENIC
SBS	Chr1	40112336	G-A	Hetero	INTERGENIC
SBS	Chr2	17860981	G-T	Hetero	INTERGENIC
SBS	Chr2	18449287	A-T	Hetero	INTERGENIC
SBS	Chr2	24666300	T-A	Hetero	INTERGENIC
SBS	Chr3	15829157	T-G	Hetero	INTRON
SBS	Chr3	16218640	T-C	Hetero	INTERGENIC
SBS	Chr3	19427306	G-A	Hetero	INTERGENIC
SBS	Chr3	26572745	C-T	Hetero	INTERGENIC
SBS	Chr5	6885155	T-C	Homo	INTERGENIC
SBS	Chr5	9586894	A-T	Homo	INTERGENIC
SBS	Chr5	10815920	C-T	Hetero	INTERGENIC
SBS	Chr6	3383673	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g047500
SBS	Chr6	5983210	G-A	Hetero	INTERGENIC
SBS	Chr6	14055730	T-C	Hetero	INTERGENIC
SBS	Chr6	23538146	G-C	Hetero	INTERGENIC
SBS	Chr6	28630750	G-C	Hetero	INTERGENIC
SBS	Chr7	15564734	T-C	Hetero	INTERGENIC
SBS	Chr8	3449957	T-A	Hetero	INTERGENIC
SBS	Chr8	15754011	C-T	Hetero	INTERGENIC
SBS	Chr8	25627631	G-A	Hetero	INTERGENIC
SBS	Chr9	11120816	A-T	Hetero	INTERGENIC
SBS	Chr9	18323120	C-T	Hetero	INTERGENIC
SBS	Chr10	13013100	A-G	Homo	INTERGENIC
SBS	Chr11	9059080	T-G	Hetero	INTERGENIC
SBS	Chr11	13502547	C-T	Hetero	INTERGENIC
SBS	Chr12	1009099	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g015300
SBS	Chr12	13285687	G-T	Hetero	INTERGENIC
SBS	Chr12	24040222	T-C	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	3331650	3331663	13
Deletion	Chr4	3463818	3463819	1
Deletion	Chr12	5206509	5206510	1
Deletion	Chr6	6803409	6803413	4
Deletion	Chr11	7338513	7338514	1
Deletion	Chr5	8039840	8039845	5
Deletion	Chr2	9962899	9962907	8
Deletion	Chr11	15130717	15130719	2
Deletion	Chr7	18428838	18428845	7
Deletion	Chr12	19303524	19303531	7
Deletion	Chr3	19457939	19457940	1
Deletion	Chr9	21924957	21924958	1
Deletion	Chr2	33489550	33489552	2
Deletion	Chr2	33695030	33695036	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	19374826	19608941
Inversion	Chr4	19374835	19608963

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes