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Mutant Information

Mutant Name	FN3673-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3673-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1067490 C-T Hetero INTERGENIC
SBS Chr1 11687017 T-A Hetero INTERGENIC
SBS Chr1 11687019 C-A Hetero INTERGENIC
SBS Chr1 12023808 T-A Hetero INTERGENIC
SBS Chr1 12441046 G-A Hetero INTRON
SBS Chr1 33231430 G-A Homo INTERGENIC
SBS Chr2 2256179 C-T Hetero INTERGENIC
SBS Chr2 4472920 C-T Hetero INTERGENIC
SBS Chr2 23767747 T-A Hetero INTERGENIC
SBS Chr2 35195104 T-A Hetero INTERGENIC
SBS Chr3 14722205 C-A Homo INTERGENIC
SBS Chr3 21328129 G-A Homo INTERGENIC
SBS Chr3 33957566 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g366500
SBS Chr4 3152606 G-A Hetero INTERGENIC
SBS Chr4 17574556 T-A Hetero INTERGENIC
SBS Chr4 20166796 G-T Hetero INTERGENIC
SBS Chr4 31139002 T-G Hetero INTERGENIC
SBS Chr5 5369476 C-A Hetero INTERGENIC
SBS Chr5 7872567 C-T Hetero INTERGENIC
SBS Chr5 19265249 G-T Hetero INTERGENIC
SBS Chr5 22828850 G-A Hetero INTRON
SBS Chr6 3132916 T-C Hetero INTRON
SBS Chr6 18939604 G-T Homo INTERGENIC
SBS Chr7 8619230 G-A Hetero INTERGENIC
SBS Chr7 28507258 C-T Homo INTERGENIC
SBS Chr8 6071532 C-G Hetero INTERGENIC
SBS Chr8 6781028 G-A Hetero INTERGENIC
SBS Chr8 27307584 C-T Hetero INTERGENIC
SBS Chr9 10024233 C-A Homo NON_SYNONYMOUS_CODING OsKitaake09g061000
SBS Chr9 10057183 T-A Homo INTRON
SBS Chr10 9826721 C-A Homo INTERGENIC
SBS Chr10 12158772 G-A Homo INTERGENIC
SBS Chr10 13591221 C-A Hetero INTERGENIC
SBS Chr10 22485257 C-G Homo INTERGENIC
SBS Chr11 2775989 G-A Hetero INTERGENIC
SBS Chr11 7399870 C-T Homo INTERGENIC
SBS Chr11 7399894 C-T Homo INTERGENIC
SBS Chr11 15621431 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g125600
SBS Chr12 17897649 G-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2749654 2749656 2 OsKitaake01g034700
Deletion Chr11 5770641 5770642 1 OsKitaake11g070700
Deletion Chr6 6317201 6317212 11
Deletion Chr9 7642338 7642348 10
Deletion Chr7 9038164 9038165 1
Deletion Chr9 10023664 10023678 14
Deletion Chr10 10521902 10521922 20
Deletion Chr8 10815616 10815624 8
Deletion Chr7 11153399 11153401 2
Deletion Chr1 12000795 12000804 9
Deletion Chr4 13942514 13942515 1
Deletion Chr7 15020501 15020503 2
Deletion Chr4 15192655 15192656 1
Deletion Chr1 20317031 20317033 2
Deletion Chr1 24391092 24391112 20
Deletion Chr1 28350491 28350492 1
Deletion Chr6 30465739 30465740 1 2
Deletion Chr1 31516208 31516210 2 OsKitaake01g316300
Deletion Chr2 33759151 33759152 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5241306 5241309 2
Insertion Chr2 26338357 26338362 4
Insertion Chr4 25273281 25273284 2
Insertion Chr7 11037064 11037067 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2527287 Chr1 22704134 OsKitaake01g217100
Translocation Chr11 2527300 Chr1 22703475

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1067490	C-T	Hetero	INTERGENIC
SBS	Chr1	11687017	T-A	Hetero	INTERGENIC
SBS	Chr1	11687019	C-A	Hetero	INTERGENIC
SBS	Chr1	12023808	T-A	Hetero	INTERGENIC
SBS	Chr1	12441046	G-A	Hetero	INTRON
SBS	Chr1	33231430	G-A	Homo	INTERGENIC
SBS	Chr2	2256179	C-T	Hetero	INTERGENIC
SBS	Chr2	4472920	C-T	Hetero	INTERGENIC
SBS	Chr2	23767747	T-A	Hetero	INTERGENIC
SBS	Chr2	35195104	T-A	Hetero	INTERGENIC
SBS	Chr3	14722205	C-A	Homo	INTERGENIC
SBS	Chr3	21328129	G-A	Homo	INTERGENIC
SBS	Chr3	33957566	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g366500
SBS	Chr4	3152606	G-A	Hetero	INTERGENIC
SBS	Chr4	17574556	T-A	Hetero	INTERGENIC
SBS	Chr4	20166796	G-T	Hetero	INTERGENIC
SBS	Chr4	31139002	T-G	Hetero	INTERGENIC
SBS	Chr5	5369476	C-A	Hetero	INTERGENIC
SBS	Chr5	7872567	C-T	Hetero	INTERGENIC
SBS	Chr5	19265249	G-T	Hetero	INTERGENIC
SBS	Chr5	22828850	G-A	Hetero	INTRON
SBS	Chr6	3132916	T-C	Hetero	INTRON
SBS	Chr6	18939604	G-T	Homo	INTERGENIC
SBS	Chr7	8619230	G-A	Hetero	INTERGENIC
SBS	Chr7	28507258	C-T	Homo	INTERGENIC
SBS	Chr8	6071532	C-G	Hetero	INTERGENIC
SBS	Chr8	6781028	G-A	Hetero	INTERGENIC
SBS	Chr8	27307584	C-T	Hetero	INTERGENIC
SBS	Chr9	10024233	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g061000
SBS	Chr9	10057183	T-A	Homo	INTRON
SBS	Chr10	9826721	C-A	Homo	INTERGENIC
SBS	Chr10	12158772	G-A	Homo	INTERGENIC
SBS	Chr10	13591221	C-A	Hetero	INTERGENIC
SBS	Chr10	22485257	C-G	Homo	INTERGENIC
SBS	Chr11	2775989	G-A	Hetero	INTERGENIC
SBS	Chr11	7399870	C-T	Homo	INTERGENIC
SBS	Chr11	7399894	C-T	Homo	INTERGENIC
SBS	Chr11	15621431	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g125600
SBS	Chr12	17897649	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2749654	2749656	2	OsKitaake01g034700
Deletion	Chr11	5770641	5770642	1	OsKitaake11g070700
Deletion	Chr6	6317201	6317212	11
Deletion	Chr9	7642338	7642348	10
Deletion	Chr7	9038164	9038165	1
Deletion	Chr9	10023664	10023678	14
Deletion	Chr10	10521902	10521922	20
Deletion	Chr8	10815616	10815624	8
Deletion	Chr7	11153399	11153401	2
Deletion	Chr1	12000795	12000804	9
Deletion	Chr4	13942514	13942515	1
Deletion	Chr7	15020501	15020503	2
Deletion	Chr4	15192655	15192656	1
Deletion	Chr1	20317031	20317033	2
Deletion	Chr1	24391092	24391112	20
Deletion	Chr1	28350491	28350492	1
Deletion	Chr6	30465739	30465740	1	2
Deletion	Chr1	31516208	31516210	2	OsKitaake01g316300
Deletion	Chr2	33759151	33759152	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2527287	Chr1	22704134	OsKitaake01g217100
Translocation	Chr11	2527300	Chr1	22703475

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes